View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9860_low_15 (Length: 324)
Name: NF9860_low_15
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_15 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
| [»] scaffold0046 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 5558678 - 5558372
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558678 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
5558579 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558578 |
tagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
5558479 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5558478 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
5558379 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
5558378 |
tgaaaca |
5558372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 20809915 - 20810080
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaat------------gagataacatgaataattaggccat |
241 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
20809915 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgttagattattatgttagatattgagataacatgaataattagaccat |
20810014 |
T |
|
| Q |
242 |
ttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
|||||||||| | || | ||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
20810015 |
ttttatgattacctgccgattgtgcaagcatgactatcatgccatatgaatggtacatttgaaaca |
20810080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 41529300 - 41528994
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529300 |
taagagaatgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
41529201 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529200 |
tagcaaaagctgaaaattttggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
41529101 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41529100 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
41529001 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
41529000 |
tgaaaca |
41528994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 37368273 - 37368574
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | | |
|
|
| T |
37368273 |
taagagtacatcacaaatgagttgagttgttttggaaagagcaagacctataagccaagacataagctattttggaaaatggattatggagttttgga-c |
37368371 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
37368372 |
tagcaaaagctgcaaattttggataagctgcttgcaatttcgggactaattccaaggtgagttcctttagctttgaacccacctttggagatcgattatg |
37368471 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||| ||| |||||||||| |||| ||||||||||| | || || |||| |||||||||| |||||| |
|
|
| T |
37368472 |
attatgctagattattaagataacatgaataattagacca-ttttatgattacttgccttttgtgcaaacgtgtctgttatgccatatgaatggtacatt |
37368570 |
T |
|
| Q |
301 |
tgaa |
304 |
Q |
| |
|
|||| |
|
|
| T |
37368571 |
tgaa |
37368574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 42785300 - 42785606
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
42785300 |
taagagtatgtcacaaatgagttgagttgtttcggaaagagcaagacctataagccaagacatatgctattttggaaaatggactatggagttttggagc |
42785399 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42785400 |
tagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttgggaatggattatg |
42785499 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42785500 |
attatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgcaagcatgactactatgccatatgaatgatacatt |
42785599 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
42785600 |
tgaaaca |
42785606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 4341997 - 4341700
Alignment:
| Q |
10 |
gtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaag |
109 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4341997 |
gtcacaactgagttgaattgttttggaaagagcaagacctatagtccaagacataagctattttggaaaatggattatggagttttggagctagcaaaag |
4341898 |
T |
|
| Q |
110 |
ctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgtta |
209 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
4341897 |
cttcaaattgtggataagttgcttgcaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgtta |
4341798 |
T |
|
| Q |
210 |
gattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
4341797 |
gattattgagataatatggataattagaccatttttatgattacttgccgattgtgcaagcatgactatcatgccatatgaatggtacatttgaaaca |
4341700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 19803681 - 19803528
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19803681 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
19803582 |
T |
|
| Q |
254 |
ttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19803581 |
ttgtcttttgtgcaagcatgactactatgccatatgaatgatacatttgaaaca |
19803528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 48 - 303
Target Start/End: Original strand, 21957937 - 21958192
Alignment:
| Q |
48 |
ctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctgcttg-caatttc-ggga |
145 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| ||||| ||||||| || |||||||||||| | ||| |||||||| || || | ||||| |||| |
|
|
| T |
21957937 |
ctataagtcaaggcataagctattttggaaaatgg-ttatgaagttttggagatagcaaaagctgcagattatggataaggtgtttttccatttcaggga |
21958035 |
T |
|
| Q |
146 |
ctaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccattttt |
245 |
Q |
| |
|
| | | | || |||||||||||| ||||| |||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| || ||||| |
|
|
| T |
21958036 |
gtgtttc-acggcgagttcctttagcttagagcccacctttggggatcagttatgattatgttatattattgagataacatgaataattagacctttttt |
21958134 |
T |
|
| Q |
246 |
atgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||| |
|
|
| T |
21958135 |
atgatttcttgtcttttgtgcaagcatgactattatgccatatgaaaggtacatttga |
21958192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 3078220 - 3078295
Alignment:
| Q |
63 |
taagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctgcttgcaat |
138 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| | |||||| |||||||||||||||||||| |||| |
|
|
| T |
3078220 |
taagctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctgctttcaat |
3078295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 3081736 - 3081669
Alignment:
| Q |
63 |
taagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctg |
130 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| | |||||| ||||||||||||||||| |
|
|
| T |
3081736 |
taagctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagctg |
3081669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 2893947 - 2894253
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
2893947 |
taagagtatgtcacaaatgagttgagttgtttcggaaagagcaagacctataagccaagacataagctattttggaaaatggactatggagttttggagc |
2894046 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2894047 |
tagtaaaagctgcaaattgtggataagttgcttgtaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttgggaatggattatg |
2894146 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2894147 |
attatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgcaagcatgactactatgccatatgaatgatacatt |
2894246 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
2894247 |
tgaaaca |
2894253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 4853300 - 4852995
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| | |||||||||||| |||||| ||| |||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4853300 |
taagagtatgtcacaaatgagctgagttgtttcggaaagagaaaaacctataagccaagacataagctattttggaaaatggattatggagttttggagc |
4853201 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
4853200 |
tagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatg |
4853101 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||| || ||||||| |||||| |
|
|
| T |
4853100 |
attatgttagattattgagataacatgaataattagaccatttttatgattacttgccgattgtgcaagcatgactatcatgcca-atgaatggtacatt |
4853002 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
4853001 |
tgaaaca |
4852995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 304
Target Start/End: Complemental strand, 14191064 - 14190915
Alignment:
| Q |
155 |
aggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttct |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
14191064 |
aggtgagttcctttagcttagaacccacctttggagatcgattatgattatgctagattattgagataacatgaataattagaccatttttatgattact |
14190965 |
T |
|
| Q |
255 |
tgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaa |
304 |
Q |
| |
|
| |||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
14190964 |
cgccttttgtgcaagcatgactattatgccatatgaatggtacatttgaa |
14190915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 1506695 - 1506536
Alignment:
| Q |
148 |
aatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttat |
247 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
1506695 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
1506596 |
T |
|
| Q |
248 |
gatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
|||| |||| | ||||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
1506595 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatggtacatttgaaaca |
1506536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 13713829 - 13713700
Alignment:
| Q |
148 |
aatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttat |
247 |
Q |
| |
|
||||| ||||||||||||||| | ||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
13713829 |
aatgctaaggtgagttcctttcgcttataacccacctttggggatcaattatgattatgttagattattgagataatatgaataattaaaccatttttat |
13713730 |
T |
|
| Q |
248 |
gatttcttgtcttttgtgcaagcatgacta |
277 |
Q |
| |
|
|||| | || | ||||||||||||||||| |
|
|
| T |
13713729 |
gattacctgccgattgtgcaagcatgacta |
13713700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 5577059 - 5577156
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatt |
251 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||| |
|
|
| T |
5577059 |
aaggtgagttcctttagcttagaatccacctttggggatcaattatgattatgttagattattgacataacatgaataattagaccatttttaggatt |
5577156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6734858 - 6734990
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| | ||||||| || |||||||| |||| ||||| | |||| | |||||| ||| | ||||||||||||||||| ||||||||||||||| || |
|
|
| T |
6734858 |
taagagtatgtcacaagtgggttgagttgttttagaaagggaaagaccgataagctaaggcataagctattttggaaaaatgattatggagttttggaga |
6734957 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgctt |
133 |
Q |
| |
|
||| | |||||| |||||| ||||||||||||| |
|
|
| T |
6734958 |
tagaagaagctgcaaattggggataagctgctt |
6734990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29933950 - 29934253
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| |||| ||||||||||| || ||| || |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
29933950 |
taagagtacgttacaaatgagtt---ttgtttcgggaagagcaagatctataagccaagacataagctattttggaaaatggattatggatttttggagc |
29934046 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29934047 |
tagcaaaagctgcaaattgtggataagctgcttgtaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttgggaatggattatg |
29934146 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29934147 |
attatgttagattaatgagataacatgaataattagaccatttttatgatttcttgtcttttgtgcaagcatgactactatgccatatgaatgatacatt |
29934246 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
29934247 |
tgaaaca |
29934253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 33295531 - 33295833
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33295531 |
taagagtacgtcacaaatgagttgagttgttttggaaagagcaagacctataagccaagacataagctattttggaaaatggattatggagttttggagc |
33295630 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
33295631 |
tagtaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttggagatcgattatg |
33295730 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||| || |||| | ||||||||||||||||||| ||| |||||||||| |||| ||||||| ||| |||| || |||| |||||||||| |||||| |
|
|
| T |
33295731 |
attatgctacattattaagataacatgaataattagacca-ttttatgattacttgccttttgtacaaacatgtctgttatgccatatgaatggtacatt |
33295829 |
T |
|
| Q |
301 |
tgaa |
304 |
Q |
| |
|
|||| |
|
|
| T |
33295830 |
tgaa |
33295833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 5249362 - 5249669
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttgg-aaaatggattatggagttttgaag |
99 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
5249362 |
taagagtatgtcacaaatgagttgagttgttttggaaagagaaagacctataagccaagacataagctatttttttaaaatggattatgaagttttggag |
5249461 |
T |
|
| Q |
100 |
ctagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattat |
199 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
5249462 |
ttaacaaaagctgaaaattatggataagctgcctgcaatctcgggactaatgccaaggtgagttcctttagcttagaacccacctttggggatcgattat |
5249561 |
T |
|
| Q |
200 |
gattatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacat |
299 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
5249562 |
gaatatgttagattattgagataacatcaataattagaccatttttatgattacttgtcttttatgcaagcatgactattatgccatatgaatggtacat |
5249661 |
T |
|
| Q |
300 |
ttgaaaca |
307 |
Q |
| |
|
|||||||| |
|
|
| T |
5249662 |
ttgaaaca |
5249669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 28223358 - 28223061
Alignment:
| Q |
14 |
caaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctga |
113 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28223358 |
caaatgagttgagttgtttcggaaagagcaagacctataagccaagacataagctattttggaaaatggattatggagttttggagctagcaaaagctgc |
28223259 |
T |
|
| Q |
114 |
aaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcct----ttagtttagaacccacctttgggaatggattatgattatgtta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
28223258 |
aaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttactttaattagcttagaacccacatttggggatcaattatgattatgtta |
28223159 |
T |
|
| Q |
210 |
gattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||| | |||||||||||| |||| |||||||||||||| || |||||||||| |
|
|
| T |
28223158 |
gattatcgagataacatgaataattagaccatttttatgattacttgccaattgtgcaagcataactatcatgtcatatgaatggtatatttgaaaca |
28223061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 34255006 - 34255159
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255006 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
34255105 |
T |
|
| Q |
254 |
ttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34255106 |
ttgtcttttgtgcaagcatgactactatgccatatgaatgatacatttgaaaca |
34255159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 149 - 304
Target Start/End: Complemental strand, 8520357 - 8520202
Alignment:
| Q |
149 |
atgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatg |
248 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||| || ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||| |
|
|
| T |
8520357 |
atgccaaggtgagttcctttagcttagaacgcacctttggggatcgattatgattaggttagattattgagataacataaataattagaccatttttatg |
8520258 |
T |
|
| Q |
249 |
atttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaa |
304 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
8520257 |
attttttgacttttgtgcaagcatgactattatgccatatgaatggtacatttgaa |
8520202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 26619924 - 26620083
Alignment:
| Q |
148 |
aatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttat |
247 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
26619924 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
26620023 |
T |
|
| Q |
248 |
gatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
|||| |||| | ||||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
26620024 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatggtacatttgaaaca |
26620083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 26725837 - 26725996
Alignment:
| Q |
148 |
aatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttat |
247 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
26725837 |
aatgctaaggtgagttcctttagcttagaacccacctttggggatcaattataattatgttagattattgagataacatgaataattagaccatttttat |
26725936 |
T |
|
| Q |
248 |
gatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
|||| |||| | ||||||||||||||||| || |||||||||| ||||||||||||| |
|
|
| T |
26725937 |
gattacttgccgattgtgcaagcatgactatcataccatatgaatggtacatttgaaaca |
26725996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 28146315 - 28146260
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgtta |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
28146315 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatgtta |
28146260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 28145616 - 28145540
Alignment:
| Q |
216 |
tgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaat |
292 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| || | | ||||||||||||||||| ||| ||||||||| |
|
|
| T |
28145616 |
tgagataacatgaataattagaccatttttagaattactcgccgattgtgcaagcatgactatcatgccatatgaat |
28145540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 5130521 - 5130577
Alignment:
| Q |
148 |
aatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgatta |
204 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| |||||| || |||||||||| |
|
|
| T |
5130521 |
aatgctaaggtgagttcctttagcttagagcccacatttggggatcaattatgatta |
5130577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 2742748 - 2743025
Alignment:
| Q |
30 |
ttttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagct |
129 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
2742748 |
ttttgggaagagcaagatctataagccaagacataagctattttggaaaatggattatggatttttggagctagcaaaagctgcaaattgtggataagct |
2742847 |
T |
|
| Q |
130 |
gcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaa |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
2742848 |
gcttgaaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttgggaatggatcatgattatgttagtttaatgagataacatgaa |
2742947 |
T |
|
| Q |
230 |
taattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
2742948 |
taattagaccatttttatgatttcttgtcttttgtgcaagcatgactactatgccatatgaatgatacttttgaaaca |
2743025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 2696389 - 2696544
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
2696389 |
taagagtacgtcacaaatgagttgagttgttttggaaagagcaagacctataagccaagacataagctattttggaaaatggattatggagttttggagt |
2696488 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaag |
156 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2696489 |
tagcaaaagctgaaaattgtgaataagctgcttgcaatttcgggactaatgccaag |
2696544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 31342929 - 31343021
Alignment:
| Q |
41 |
gcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctgctt |
133 |
Q |
| |
|
|||||| ||| ||| |||| | ||||||||||||||||| |||||| |||||||| || ||||| ||| || | ||| |||||||| ||||| |
|
|
| T |
31342929 |
gcaagacctacaagtcaaggcataagctattttggaaaagcgattatagagttttggagatagcagaagttggagattttggataagttgctt |
31343021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 14114147 - 14114452
Alignment:
| Q |
1 |
taagagaacgtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagc |
100 |
Q |
| |
|
|||||| | |||||||||||| |||||| ||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14114147 |
taagagtatgtcacaaatgagctgagttgtttcggaaagagaaagacctataagccaagacataagctattttggaaaatggattatggagttttggagc |
14114246 |
T |
|
| Q |
101 |
tagcaaaagctgaaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagtttagaacccacctttgggaatggattatg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
14114247 |
tagcaaaagctgcaaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcctttagcttagaacccacctttggggatcaattatg |
14114346 |
T |
|
| Q |
201 |
attatgttagattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatt |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |||||||||||||| ||| | ||||||||||||||||| ||| || | ||||| |||||| |
|
|
| T |
14114347 |
attatgttagattattgagataacatgaacaattagaccatttttatgattactttccgattgtgcaagcatgactatcatgcca-aggaatggtacatt |
14114445 |
T |
|
| Q |
301 |
tgaaaca |
307 |
Q |
| |
|
||||||| |
|
|
| T |
14114446 |
tgaaaca |
14114452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 51844922 - 51844769
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||| | | ||||||||| | |
|
|
| T |
51844922 |
aaggtgagttcctttagcttagaacccacctttggggatcaattatgattatattagattattgagataacatgaataattagatcctctttatgattac |
51844823 |
T |
|
| Q |
254 |
ttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||| | ||||||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
51844822 |
ttgccgattgtgcaagcatgactatcatgccatatgaatggtacatttgaaaca |
51844769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 15089079 - 15089004
Alignment:
| Q |
63 |
taagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctgcttgcaat |
138 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||| | |||||| |||||||||||||| ||||| |||| |
|
|
| T |
15089079 |
taagctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
15089004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 22211707 - 22211612
Alignment:
| Q |
43 |
aagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctgaaaattgtggataagctgcttgcaat |
138 |
Q |
| |
|
|||| |||||||| ||| | |||||||||||||||| |||||||||||||| || ||| | |||||| |||||||||||||| ||||| |||| |
|
|
| T |
22211707 |
aagacctataagctaaggcagaagctattttggaaaagtgattatggagttttagagatagaagaagctgcaaattgtggataagttgctttcaat |
22211612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 23856 - 23559
Alignment:
| Q |
14 |
caaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaagctga |
113 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23856 |
caaatgagttgagttgtttcggaaagagcaagacctataagccaagacataagctattttggaaaatggattatggagttttggagctagcaaaagctgc |
23757 |
T |
|
| Q |
114 |
aaattgtggataagctgcttgcaatttcgggactaatgccaaggtgagttcct----ttagtttagaacccacctttgggaatggattatgattatgtta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||| |||||| || ||||||||||||||| |
|
|
| T |
23756 |
aaattgtggataagctgcttgcaatttcgggactaatgccaaggagagttactttaattagcttagaacccacatttggggatcaattatgattatgtta |
23657 |
T |
|
| Q |
210 |
gattaatgagataacatgaataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||| | |||||||||||| |||| |||||||||||||| || |||||||||| |
|
|
| T |
23656 |
gattatcgagataacatgaataattagaccatttttatgattacttgccaattgtgcaagcataactatcatgtcatatgaatggtatatttgaaaca |
23559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 308
Target Start/End: Original strand, 14530141 - 14530295
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14530141 |
aaggtgagttcctttagcttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
14530240 |
T |
|
| Q |
254 |
ttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaacat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14530241 |
ttgtcttttgtgcaagcatgactactatgccatatgaatgatacatttgaaacat |
14530295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 28035319 - 28035190
Alignment:
| Q |
10 |
gtcacaaatgagttgagttattttggaaagagcaagagctataagccaagacttaagctattttggaaaatggattatggagttttgaagctagcaaaag |
109 |
Q |
| |
|
||||||| ||||||||| | ||| ||||| | |||| |||||||||||||| ||||||||| ||||| ||||| ||||||||| || |||| ||| |
|
|
| T |
28035319 |
gtcacaactgagttgagatgtttcggaaaaggaaagacctataagccaagacagtagctattttcgaaaagtgattacggagttttgtagaaagcagaag |
28035220 |
T |
|
| Q |
110 |
ctgaaaattgtggataagctgcttgcaatt |
139 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
28035219 |
ctgcaaattgtggataagctgcttgcaatt |
28035190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 26259 - 26412
Alignment:
| Q |
154 |
aaggtgagttcctttagtttagaacccacctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
253 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26259 |
aaggtgagttcctttagcttagaacccgcctttgggaatggattatgattatgttagattaatgagataacatgaataattaggccatttttatgatttc |
26358 |
T |
|
| Q |
254 |
ttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26359 |
ttgtcttttgtgcaagcatgactactatgccatatgaatgatacatttgaaaca |
26412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 91062 - 90985
Alignment:
| Q |
229 |
ataattaggccatttttatgatttcttgtcttttgtgcaagcatgactactatgtcatatgaatgatacatttgaaaca |
307 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||||| ||| |||| |||||||||| ||||||||||||| |
|
|
| T |
91062 |
ataattagaccatttttatgataattt-tcttttgtgcaagcattcctattatgccatatgaatggtacatttgaaaca |
90985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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