View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_16 (Length: 322)
Name: NF9860_low_16
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 51540537 - 51540243
Alignment:
| Q |
18 |
gcttgtgtatccttcatgacacgttgctctccctccatactctttccccataaaagaatatacatgccaacaataaccaatgcagatcctgcaatactgc |
117 |
Q |
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| T |
51540537 |
gcttgtgtatccttcatgacacgttgctctccctccatactctttccccataaaagaatatacatgccaacaataaccaatgcagatcctgcaatactgc |
51540438 |
T |
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| Q |
118 |
ttatagtagatagggatacattaggtgcaatggaataaagaaaaggtatgggaatcttagaagactnnnnnnnnnnnnnnnnnnnnnnntcaaccttcct |
217 |
Q |
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| T |
51540437 |
ttatagtagatagggatacattaggtgcaatggaataaagaaaaggtatgggaatcttagaagactaaaaaacaaaatggaaaaagaaatcaaccttcct |
51540338 |
T |
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| Q |
218 |
aagtatatttcctcctttagtatagagaaatcaaggacagccacatatatctgtaaaagaggggtaaatgctgcagtaaaaactggacccctttg |
312 |
Q |
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| T |
51540337 |
aagtatatttcctcctttagtatagagaaatcaaggacagccacatatatctgtaaaagaggggtaaatgctgcagtaaaaactggacccctttg |
51540243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 14213158 - 14213054
Alignment:
| Q |
208 |
caaccttcctaagtatatttcctcctttagtatagagaaatcaaggacagccacatatatctgtaaaagaggggtaaatgctgcagtaaaaactggaccc |
307 |
Q |
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||||||||||| || |||||||| | || |||| | | |||||| ||||||||| | ||||||| ||| |||||||||||||| ||||||||||| ||| |
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| T |
14213158 |
caaccttcctagataaatttcctcttgtaatatacaaagatcaagcacagccacaaacatctgtataagtggggtaaatgctgctgtaaaaactggtccc |
14213059 |
T |
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| Q |
308 |
ctttg |
312 |
Q |
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|||| |
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| T |
14213058 |
ttttg |
14213054 |
T |
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