View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_17 (Length: 292)
Name: NF9860_low_17
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 5771585 - 5771314
Alignment:
| Q |
8 |
ttggtggtgatggcgatattgacactttactaaattgtgatgcaaggaagttaaagatcatcccaaagattgtcacgcaagtctttaattatgcaaccat |
107 |
Q |
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| T |
5771585 |
ttggtggtgatggcgatattgacactttactaaattgtgatgcaaggaagttaaagatcatcccaaagattgtcacgcaagtctttaattatgcaaccat |
5771486 |
T |
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| Q |
108 |
gaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccacctagccggagcgagcagacgtcgca |
207 |
Q |
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| T |
5771485 |
gaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccacctagccggagcgagcagacgtcgca |
5771386 |
T |
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| Q |
208 |
gacagctgctgctctcaaattaaaccatcttgacatacatcatgattatgcagaatcataaaagtttgattt |
279 |
Q |
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| T |
5771385 |
gacagctgctgctctcaaattaaaccatcttgacatacatcatgattatgcagaatcataaaagtttgattt |
5771314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 23214508 - 23214315
Alignment:
| Q |
8 |
ttggtggtgatggcgatattgacactttactaaattgtgatgcaaggaagttaaagatcatcccaaagattgtcacgcaagtctttaattatgcaaccat |
107 |
Q |
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| T |
23214508 |
ttggtggtgatggcgatattgacactttactaaattgtgatgcaaggaagttaaagatcatccctaagattgtcatgcaagtctttaattatgcaaccat |
23214409 |
T |
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| Q |
108 |
gaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccacctagccggagcgagcagac |
201 |
Q |
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| T |
23214408 |
gaataaagaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccatctagccggagcaagcagac |
23214315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 98 - 279
Target Start/End: Original strand, 33866557 - 33866738
Alignment:
| Q |
98 |
atgcaaccatgaataaaaaattgttctaacttgccgtgacagcggaaatcatgtgtatatgaaggcaggagtgattgttttccacctagccggagcgagc |
197 |
Q |
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| T |
33866557 |
atgcaaccatgaataaaaaattattctaacttaccgtgacagcggaaatcatgggtatatgaaggcaggagtgattgttttccatctagccggagcgagc |
33866656 |
T |
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| Q |
198 |
agacgtcgcagacagctgctgctctcaaattaaaccatcttgacatacatcatgattatgcagaatcataaaagtttgattt |
279 |
Q |
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| T |
33866657 |
agacgtcgcagacagctgctgctctcaaattaaatcattttgacatacatcatgatgatgcagaatcataaaagtttgattt |
33866738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 44573971 - 44574085
Alignment:
| Q |
139 |
gcggaaatcatgtgtatatgaaggcaggagtgattgttttccacctagccggagcgagcagacgtcgcagacagctgctgctctcaaattaaaccatctt |
238 |
Q |
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| T |
44573971 |
gcggaaatcatgtatagatgaaagtaggagttcttgttttccatctagccggagtgagcagacgacgcaaacagccgctgctctcaaattaaaccatctt |
44574070 |
T |
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| Q |
239 |
gacatacatcatgat |
253 |
Q |
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| T |
44574071 |
gacatacatgatgat |
44574085 |
T |
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