View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_18 (Length: 289)
Name: NF9860_low_18
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 35766978 - 35766709
Alignment:
| Q |
1 |
tcaatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaaca |
100 |
Q |
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| T |
35766978 |
tcaatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaaca |
35766879 |
T |
|
| Q |
101 |
atcacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggctaaccaatttagacaaccattcagatacg |
200 |
Q |
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| T |
35766878 |
atcacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggccaaccaatttagacaaccattcagataca |
35766779 |
T |
|
| Q |
201 |
caccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctcca |
270 |
Q |
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| T |
35766778 |
caccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctcca |
35766709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 36260212 - 36260088
Alignment:
| Q |
2 |
caatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaa |
101 |
Q |
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| T |
36260212 |
caatatacataccgatggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctc--tgtttccagatcaagtgaaacaa |
36260115 |
T |
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| Q |
102 |
tcacaaattctctaatatccattttct |
128 |
Q |
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| T |
36260114 |
tcacaaattttttaacattcattttct |
36260088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 36255293 - 36255221
Alignment:
| Q |
34 |
tttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaa |
108 |
Q |
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||||||||||||| | |||||||||| ||| ||||| |||||| |||||||| ||||||| |||||||||||| |
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| T |
36255293 |
tttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctct--gttcccagatcaagcgcaacaatcacaaa |
36255221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 20495586 - 20495533
Alignment:
| Q |
164 |
cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacacca |
217 |
Q |
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| T |
20495586 |
cgaagagccaaccaattcagactaccattcaaatacacaccatcattcacacca |
20495533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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