View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_26 (Length: 238)
Name: NF9860_low_26
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16481170 - 16480948
Alignment:
| Q |
1 |
atatggttaatccttcaatgtctcttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttttccttacacaccaaaatc |
100 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16481170 |
atatggctaatccttcaacgtcttttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttttccttacacacgaaaatc |
16481071 |
T |
|
| Q |
101 |
tcaggaagaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggtcatggtttcgacaccaatacctccctca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
16481070 |
tcaagaagaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggtcatggtttcgacagcaatacctcactca |
16480971 |
T |
|
| Q |
201 |
caagctccatacaatacaattct |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
16480970 |
caagctccatacaatacaattct |
16480948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17605030 - 17605252
Alignment:
| Q |
1 |
atatggttaatccttcaatgtctcttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttttccttacacaccaaaatc |
100 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
17605030 |
atatggctaataattcaatgtatcttaatggtaccaatcaaattttccatgttaacaacaataaccaacttgtgaatggtttctcttccacaccaaaatc |
17605129 |
T |
|
| Q |
101 |
tcaggaagaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggtcatggtttcgacaccaatacctccctca |
200 |
Q |
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||||||| ||||||||||||||| || || |||||||||||||||||||||||||||| ||| |||||||| |||||||| | |||| ||||||| ||| |
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| T |
17605130 |
tcaggaaatggttacaaggttgcagaagattcggcctccaccattgtccattgtaaggcaaccgattccggttatggtttcaaaaccagtacctccttca |
17605229 |
T |
|
| Q |
201 |
caagctccatacaatacaattct |
223 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
17605230 |
caagctccatacaatacacttct |
17605252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 17631620 - 17631835
Alignment:
| Q |
8 |
taatccttcaatgtctcttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttttccttacacaccaaaatctcaggaa |
107 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| || ||||||| |||||| |||| |||| |
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| T |
17631620 |
taatccttcaatgtctcttaattgtaccaatcaaacttttaatgttaacaacaataaccaacttgtgaatgggttcccttacataccaaagtctcgggaa |
17631719 |
T |
|
| Q |
108 |
gaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggtcatggtttcgacaccaatacctccctcacaagctc |
207 |
Q |
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| T |
17631720 |
aagcttacaaggttgcaaaaggttcggcctccgccattgtccattgtaaggccatcaattccagtcgtggtttcgacaccactacctccttcacaagctc |
17631819 |
T |
|
| Q |
208 |
catacaatacaattct |
223 |
Q |
| |
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|| |||||||| |||| |
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| T |
17631820 |
caaacaatacacttct |
17631835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 17645119 - 17645325
Alignment:
| Q |
9 |
aatccttcaatgtctcttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttttccttacacaccaaaatctcaggaag |
108 |
Q |
| |
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|||| ||||| |||| || ||| |||||||| || ||| |||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||||||| |
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| T |
17645119 |
aatctttcaacgtcttttcatgctaccaatccaacttttaatgttaacaccaataaccaacttgtgaatggtttcccttcctcaccaaaatatcaggaaa |
17645218 |
T |
|
| Q |
109 |
aggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggtcatggtttcgacaccaatacctccctcacaagctcc |
208 |
Q |
| |
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| || ||||||||||| || || ||||||||||||||||||| ||| ||| ||||||| |||| | |||| || | ||| ||||||| ||||||||||| |
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| T |
17645219 |
atgtcacaaggttgcagaagattcggcctccaccattgtccactgtgaggataccaatttcggttaaggttccggctccagtacctccttcacaagctcc |
17645318 |
T |
|
| Q |
209 |
atacaat |
215 |
Q |
| |
|
||||||| |
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|
| T |
17645319 |
atacaat |
17645325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 17664413 - 17664339
Alignment:
| Q |
95 |
aaaatctcaggaagaggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattcc |
169 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| | || |||||||| ||||| ||||| |||||||||||||| |
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|
| T |
17664413 |
aaaatctcaggccaaggttacaaggttacaaaagaatcgacctccaccgttgtcaattgttaggccaccaattcc |
17664339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 17676246 - 17676172
Alignment:
| Q |
8 |
taatccttcaatgtctcttaatggtaccaatcaaaatttcaatgttaacaacaataaccaacttgtgaatggttt |
82 |
Q |
| |
|
||||||||| |||||||||| || ||||||| |||||| ||| ||||| | ||||||||||||||||||||| |
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|
| T |
17676246 |
taatccttctatgtctcttattgctaccaattcgaatttccttgtgaacaatagtaaccaacttgtgaatggttt |
17676172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 17950362 - 17950308
Alignment:
| Q |
109 |
aggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccacc |
163 |
Q |
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|||||||||||||||| || | || |||||||||||||||||||| |||||||| |
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| T |
17950362 |
aggttacaaggttgcagaagaatcgacctccaccattgtccattgtgaggccacc |
17950308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 17954214 - 17954160
Alignment:
| Q |
109 |
aggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccacc |
163 |
Q |
| |
|
|||||||||||||||| || | || |||||||||||||||||||| |||||||| |
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|
| T |
17954214 |
aggttacaaggttgcagaagaatcgacctccaccattgtccattgtgaggccacc |
17954160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 20751735 - 20751677
Alignment:
| Q |
109 |
aggttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaatt |
167 |
Q |
| |
|
|||||||||||||||| || | || |||||||| ||||||||||| |||||||||||| |
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|
| T |
20751735 |
aggttacaaggttgcagaaaaatcgacctccacctttgtccattgtgaggccaccaatt |
20751677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 17664551 - 17664518
Alignment:
| Q |
136 |
ctccaccattgtccattgtaaggccaccaattcc |
169 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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|
| T |
17664551 |
ctccaccattgtccattgtgaggccaccaattcc |
17664518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 18766351 - 18766407
Alignment:
| Q |
111 |
gttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaatt |
167 |
Q |
| |
|
|||||||||||||| || | || |||||| |||||||||||||||| ||||||||| |
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|
| T |
18766351 |
gttacaaggttgcagaagaatcgacctccatcattgtccattgtaagaccaccaatt |
18766407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 32669671 - 32669732
Alignment:
| Q |
111 |
gttacaaggttgcaaaatatgcggcctccaccattgtccattgtaaggccaccaattccggt |
172 |
Q |
| |
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|||||||||||||| || | ||||||||||||||||||||||| || |||||| ||||||| |
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|
| T |
32669671 |
gttacaaggttgcagaagaatcggcctccaccattgtccattgtgagaccaccagttccggt |
32669732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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