View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_4 (Length: 471)
Name: NF9860_low_4
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 48349958 - 48349558
Alignment:
| Q |
16 |
ttcgtgttagaaaaagtagcctgttaatatttgataataaataaagaatggcatttatagttatatatgtgtctacgtatgtcgttaagggttcttgctc |
115 |
Q |
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| T |
48349958 |
ttcgtgttagaaaaagtagcctattaatatttgataataaataaagaatggcatttatagttatatatgtgtctacgtatgtcgttaagggttcttgctc |
48349859 |
T |
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| Q |
116 |
cacaacaagtgcttctagattcatttccacatgtaaatggggggatgcatgcagacctgcttataattaaactggaattgaacatgcggccatgcctcaa |
215 |
Q |
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| T |
48349858 |
cacaacaagtgcttctagattcatttccacatgtaaatgaggggatgcatgcagacctgcttataattaaactggaattgaacatgcggccatgcctcaa |
48349759 |
T |
|
| Q |
216 |
catttaagaggtgagaataaatcagatagactgattgataaagacatctatgatttagctttctcatgtctaaattagattaaatttttacacggacaaa |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48349758 |
catttaagaggtgagaataaatcagacagactgattgataaagacatctatgatttagctttctcatgtctaaattagattaaatttttacacggacaaa |
48349659 |
T |
|
| Q |
316 |
aatggactagatgactannnnnnngaaggaataagatgtataacttatttacgtaaatataaattactttcatactttgtgttgaatcataaatttgttg |
415 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48349658 |
aatggactagatgactatttttttgaaggaataagatgtataacttatttacgtaaatataaattactttcatactttgtgttgaattataaatttgttg |
48349559 |
T |
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| Q |
416 |
a |
416 |
Q |
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| T |
48349558 |
a |
48349558 |
T |
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