View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_5 (Length: 459)
Name: NF9860_low_5
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 1529346 - 1529663
Alignment:
| Q |
17 |
catatggatgattgcattaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacatgtatgttctgttaacaacttgcttt |
116 |
Q |
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| T |
1529346 |
catatggatgattgcattaaatagcgtctcacctattctttgtttccaatgtgcctcccatgccactatctacatgtatgttctgttaacaacttgcttt |
1529445 |
T |
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| Q |
117 |
gccttttccaatgcattatagatcacattcttttactctcacctattctcgaaattctgcactacagatctacaatctcttctccacacaaatttcatct |
216 |
Q |
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| T |
1529446 |
gccttttccaatgcattatagatcacattcttttactctcacctattctcaaaattctgcactacagatctacaatctcttctccacacaaatttcatct |
1529545 |
T |
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| Q |
217 |
ctcatagaacagcaacccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaatgtacagataaaacctcgccgggac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529546 |
ctcatagaacagcaacccattcacccttatcgcctctattttcggcactatctacactgtttcgccatctaaaaatgtacagataaaacctcgccgggac |
1529645 |
T |
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| Q |
317 |
ggccatgttcggcataac |
334 |
Q |
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| T |
1529646 |
ggccatgttcggcataac |
1529663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 1529718 - 1529782
Alignment:
| Q |
389 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctctgcttc |
453 |
Q |
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| T |
1529718 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttc |
1529782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 26841487 - 26841551
Alignment:
| Q |
389 |
gcttcgtctgagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctctgcttc |
453 |
Q |
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| T |
26841487 |
gcttcgtcggagacaacatgtgttgcgccgacaatcgtttctccgtcgtccttgctctttgcttc |
26841551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 26841367 - 26841426
Alignment:
| Q |
270 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccgggacggccatgttcggc |
329 |
Q |
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| T |
26841367 |
acactgtttcgccatctaaaaatgtacagataaaacctcgccggaacagccatgttcggc |
26841426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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