View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9860_low_7 (Length: 452)
Name: NF9860_low_7
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 51540256 - 51539814
Alignment:
| Q |
1 |
actggacccctttgtttgacgcaccatgacattgccacatagcacatgcctgaccccaccattccctgggatcaaataaatcaaaaattcgaattctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51540256 |
actggacccctttgtttgacgcaccatgacattgccacatagcacatgcctgaccccaccattccctgggatcaaataaatcaaaaatttgaattctaaa |
51540157 |
T |
|
| Q |
101 |
gtttctatattacgacatgagcttaacagatagttttgaaaaggatttggattgctgccgtcacaattcactcactcaacacatgggtgaccgttgaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51540156 |
gtttctatattacgacatgagcttaacagatagttttgaaaaggatttggattgctgccgtcacaattcactcactcaacacatgggtggccgttgaatc |
51540057 |
T |
|
| Q |
201 |
aagatcagtcgatgcacaaagcaaacaaatttgatgttttttaaaaacactaaaataccgaacttgaaatatgactggccaattttgattcaacgacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
51540056 |
aagatcagtcgatgcacaaagcaaacaaatttgatgttttttaaaaacactaaaataccgaacttgaattatgactggccaattttgatccaacgacctc |
51539957 |
T |
|
| Q |
301 |
aatgtgctgactaagcaattgcgtgaaannnnnnnactgtagcaaatttggatcctttcgaaaatattctacaagatgtat-tatgtctcgaaaagagca |
399 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51539956 |
aatatgctgactaagcaattgcgtgaaa-ttttttactgtagcaaatttggatcctttcgaaaatattctacaagatgtatctatgtctcgaaaagagca |
51539858 |
T |
|
| Q |
400 |
ttcttacagcatatattaaacacattatttctagctttcctttg |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51539857 |
ttcttacagcatatattaaacacattatttctagctttcctttg |
51539814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14213067 - 14213007
Alignment:
| Q |
1 |
actggacccctttgtttgacgcaccatgacattgccacatagcacatgcctgaccccacca |
61 |
Q |
| |
|
||||| ||| |||||||||| ||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
14213067 |
actggtcccttttgtttgacacaccatgccattgccacatagcacaagcctgatcccacca |
14213007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 7748032 - 7747997
Alignment:
| Q |
237 |
ttttttaaaaacactaaaataccgaacttgaaatat |
272 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7748032 |
ttttttaaaaactctaaaataccgaacttgaaatat |
7747997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University