View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9860_low_8 (Length: 446)
Name: NF9860_low_8
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9860_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 44797374 - 44797792
Alignment:
| Q |
13 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797374 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtggga---ggggcaagacacaggcatgctgttctgaaatatcaaaatgtcaagcatga |
44797470 |
T |
|
| Q |
113 |
acatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaagggg- |
211 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797471 |
acatattcaggacaggacgcacgctaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggg |
44797570 |
T |
|
| Q |
212 |
---ggtggaaagcattgctatgtatgaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattacc |
308 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797571 |
gggggtggaaagcattgctatgtatcaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattacc |
44797670 |
T |
|
| Q |
309 |
aagtactggtcccttccatcctgattataataaccttttttaaatccaactctctttttccatatccaaacacccgggcttcgaaagttgcatattccac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44797671 |
aagtactggtcccttccatcctgattataataaccttttttaaatccaactctctttttccaaatccaaacacccgggcttcgaaagttgcatattccac |
44797770 |
T |
|
| Q |
409 |
atcagcattgctggcttgaaag |
430 |
Q |
| |
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||||||||||||||||||||| |
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| T |
44797771 |
gtcagcattgctggcttgaaag |
44797792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 430
Target Start/End: Complemental strand, 35162734 - 35162322
Alignment:
| Q |
15 |
aaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaac |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162734 |
aaagcaaagcaaagctaaaattacaatgtaagcaaattagtggga---ggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaac |
35162638 |
T |
|
| Q |
115 |
atattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggt |
214 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35162637 |
atattcaggacaggacgcacgctaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggagt |
35162538 |
T |
|
| Q |
215 |
ggaaagcattgctatgtatgaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35162537 |
ggaaagcattgctatgtatgaaataatttgagatgcaaagaaacattttgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtac |
35162438 |
T |
|
| Q |
315 |
tggtcccttccatcctgattataataaccttttttaaatccaactctctttttccatatccaaacacccgggcttcgaaagttgcatattccacatcagc |
414 |
Q |
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||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
35162437 |
tggtccctttgatcctgattctaataacctttcttaaatcgaactctctttttccatatccaaacactatggcttcgaaagttgcatattccttgtcagc |
35162338 |
T |
|
| Q |
415 |
attgctggcttgaaag |
430 |
Q |
| |
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|||||||||||||||| |
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| T |
35162337 |
attgctggcttgaaag |
35162322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 39841008 - 39840663
Alignment:
| Q |
1 |
ataatgtttttaaaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39841008 |
ataatgtttttaaaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccggggcatgacacaggcatgctgttctgaaatatcaaaa |
39840909 |
T |
|
| Q |
101 |
tgtcaagcatgaacatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggta |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840908 |
tgtcaagcatgaacatattcagaacaggacgcacgctaaacatggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggta |
39840809 |
T |
|
| Q |
201 |
tggtaaaggggggtggaaagcattgctatgtatgaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaat |
300 |
Q |
| |
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|||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39840808 |
tggtaaagggggatggaaagcattgctagctgtgaaataatttgagatgcaaagaaaaatattgaaaaaatgacaaacaatctggtgataagattaaaat |
39840709 |
T |
|
| Q |
301 |
aaattaccaagtactggtcccttccatcctgattataataaccttt |
346 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||| |||||||||| |
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| T |
39840708 |
aaattaccaagtgctggtccctttgatcccgatttgaataaccttt |
39840663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 334
Target Start/End: Complemental strand, 39845967 - 39845642
Alignment:
| Q |
13 |
aaaaagcaaagcaaagctaaaattacaatgtaagcaaattagtgggacccg--gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39845967 |
aaaaagcaaagcaaagctaaaattacaatgtaatcaaattagtgggaggggcagggcatgacacaggcatgctgttcagaaatatcaaaatgtcaagcat |
39845868 |
T |
|
| Q |
111 |
gaacatattcaggacaggacacacactaaacgtggcaaattaaaaaccccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggg |
210 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
39845867 |
gaacatattcaggacaggacgcacgctaaacgtggcaaattaaaa-ccccaaatgacaagctgcgaaaaaatgaggctaaacatgtggtatggtaaaggg |
39845769 |
T |
|
| Q |
211 |
gggtggaaagcattgct---atgtatgaaataatttgagatgcaaagaaacatattgaaaaaatgagaaacaatctggtgataagattaaaataaattac |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
39845768 |
gggtggaaagcattgctgctatgtatgaaataatttcagatgcaaagaaacatattgaaaaaatgacaaacaatctggtgataagattaaaataaattac |
39845669 |
T |
|
| Q |
308 |
caagtactggtcccttccatcctgatt |
334 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
39845668 |
caagtactggtcccttccatcctgatt |
39845642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 39845608 - 39845538
Alignment:
| Q |
359 |
tctctttttccatatccaaacacccgggcttcgaaagttgcatattccacatcagcattgctggcttgaaa |
429 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||| ||||||||||||||| |||||||| |||||||||| |
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|
| T |
39845608 |
tctctttttccaaatccatacacatgggcttcaaaagttgcatattccttgtcagcattcatggcttgaaa |
39845538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 31696611 - 31696721
Alignment:
| Q |
164 |
tgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggtggaaagcattgctatgtatgaaataatttgagatgcaaagaaacatatt |
263 |
Q |
| |
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|||||| |||| ||||||||||||||||||||| | | || ||| |||||| |||||||||||| | |||||| ||||||| ||||||||||| |
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| T |
31696611 |
tgacaacctacaaaaaaatgaggctaaacatattgcaggg------gggttggaaaccattgctatgtaag---taatttcagatgcagagaaacatatt |
31696701 |
T |
|
| Q |
264 |
gaaaaaatgagaaacaatct |
283 |
Q |
| |
|
| |||||||| ||||||||| |
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|
| T |
31696702 |
ggaaaaatgacaaacaatct |
31696721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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