View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9860_low_9 (Length: 379)

Name: NF9860_low_9
Description: NF9860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9860_low_9
NF9860_low_9
[»] chr4 (2 HSPs)
chr4 (112-363)||(34861156-34861403)
chr4 (258-344)||(34850028-34850111)
[»] chr3 (3 HSPs)
chr3 (4-111)||(27836116-27836223)
chr3 (132-165)||(11422989-11423022)
chr3 (52-84)||(34009459-34009491)
[»] chr7 (2 HSPs)
chr7 (1-112)||(286259-286370)
chr7 (52-112)||(31292915-31292975)
[»] chr1 (4 HSPs)
chr1 (1-112)||(16481078-16481189)
chr1 (1-59)||(27954412-27954470)
chr1 (51-111)||(27954183-27954242)
chr1 (52-92)||(46711194-46711234)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-112)||(38060-38171)
[»] chr8 (2 HSPs)
chr8 (226-318)||(28974505-28974601)
chr8 (52-111)||(26103599-26103658)
[»] chr5 (3 HSPs)
chr5 (139-194)||(17344829-17344884)
chr5 (52-89)||(35425787-35425824)
chr5 (142-178)||(7335576-7335612)
[»] chr2 (1 HSPs)
chr2 (65-112)||(5819041-5819088)
[»] chr6 (1 HSPs)
chr6 (52-110)||(24138364-24138422)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 112 - 363
Target Start/End: Original strand, 34861156 - 34861403
Alignment:
Q  112 gtgtgttaacctacgttgacatttacgctagcgtgagttaacatgtataggggtgtttttgtcatttcacttgggaccgagcagtttcagttggttgggt 211  Q
    |||||||||| ||||||| || | || |||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||    |||    
T  34861156 gtgtgttaacttacgttggcactcacactagcgtgagttaacatgtataggggtgtttttgtcattttatttgggagcaagcagtttcagttg----ggt 34861251  T
Q  212 aaagagcagttctctcttagaaatttgttctaagattttatctaaatttcttattaaagcccaagagggatatgttgctataggtacatttgttattaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34861252 aaagagcagttctctcttagaaatttgttctaagattttatctaaatttcttattaaagcccaagagggatatgttgctataggtacatttgttattaat 34861351  T
Q  312 cccttctactccccacgggtaaaattgtaaaaaatatattttagttcctctt 363  Q
    ||||||||| |||||||||||||||  |||||||||||||||| || |||||    
T  34861352 cccttctaccccccacgggtaaaatattaaaaaatatattttacttactctt 34861403  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 34850028 - 34850111
Alignment:
Q  258 tttcttattaaagcccaagagggatatgttgctataggtacatttgttattaatcccttctactccccacgggtaaaattgtaaaaa 344  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||   || ||||| ||||||||||||||||    
T  34850028 tttcttattaaagccaaagaggggtatgtagatataggtacatttgttattaatccctt---cttcccactggtaaaattgtaaaaa 34850111  T

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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 27836223 - 27836116
Alignment:
Q  4 cttattttctaggaggttcatgatagaaaaacacttggtaattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagatggct 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  27836223 cttattttctaggaggttcatgatagaaaaacacttggtaattggtaataaattaaaggggtgagggggttcagctgcatccccaggatacaagttggct 27836124  T
Q  104 ccgcccct 111  Q
    ||||||||    
T  27836123 ccgcccct 27836116  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 11423022 - 11422989
Alignment:
Q  132 atttacgctagcgtgagttaacatgtataggggt 165  Q
    |||||| |||||||||||||||||||||||||||    
T  11423022 atttacactagcgtgagttaacatgtataggggt 11422989  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 34009459 - 34009491
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatc 84  Q
    |||||||||||| ||||||||||||||||||||    
T  34009459 taaattaaagggttgagggggttcagctgcatc 34009491  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 286259 - 286370
Alignment:
Q  1 aaccttattttctaggaggttcatgatagaaaaacacttggtaattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagatg 100  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  286259 aaccttattttctcggaggttcatgatagaaaaacacttgataattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagctg 286358  T
Q  101 gctccgcccctg 112  Q
    |||||| |||||    
T  286359 gctccgtccctg 286370  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 31292975 - 31292915
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatcccctggatacaagatggctccgcccctg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31292975 taaattaaagggttgagggggttcagctgcatcccctggatacaagctggctccgcccctg 31292915  T

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Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 16481078 - 16481189
Alignment:
Q  1 aaccttattttctaggaggttcatgatagaaaaacacttggtaattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||    
T  16481078 aaccttattttctaggaggttcatgatagaaaaacacttgataattggtaataaattaaagggatgagggggttcagctgcatcccctagatacaagctg 16481177  T
Q  101 gctccgcccctg 112  Q
    ||||||||||||    
T  16481178 gctccgcccctg 16481189  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27954470 - 27954412
Alignment:
Q  1 aaccttattttctaggaggttcatgataga-aaaacacttggtaattggtaataaattaa 59  Q
    ||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||    
T  27954470 aaccttattttttaggaggttcatgatagaaaaaacactt-ataattggtaataaattaa 27954412  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 27954242 - 27954183
Alignment:
Q  51 ataaattaaaggggtgagggggttcagctgcatcccctggatacaagatggctccgcccct 111  Q
    ||||||||||||||| |||||||| |||||||||||  ||||||||| | |||||||||||    
T  27954242 ataaattaaaggggt-agggggttaagctgcatccctgggatacaagctcgctccgcccct 27954183  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 46711194 - 46711234
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatcccctggat 92  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  46711194 taaattaaagagatgagggggttcagctgcatcccctggat 46711234  T

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Target: scaffold0018 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38171 - 38060
Alignment:
Q  1 aaccttattttctaggaggttcatgatagaaaaacacttggtaattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagatg 100  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38171 aaccttattttctaggtggtttatgatagaaaagcacttggtaattggtaataaattaaaggggtgagggggttcagctgcatcccctggatacaagctg 38072  T
Q  101 gctccgcccctg 112  Q
    ||||| ||||||    
T  38071 gctccacccctg 38060  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 28974601 - 28974505
Alignment:
Q  226 tcttagaaatttgttctaagattttatctaaatttcttattaa----agcccaagagggatatgttgctataggtacatttgttattaatcccttct 318  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28974601 tcttagaaatttgttctaagattttatctaaatttcttattaattaaagcccaagaggggtatgtagctataggtacatttgttattaatcccttct 28974505  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 26103658 - 26103599
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatcccctggatacaagatggctccgcccct 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  26103658 taaattaaagggttgagggggttcagctgcatcccctggatacaagttggctccgcccct 26103599  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 17344829 - 17344884
Alignment:
Q  139 ctagcgtgagttaacatgtataggggtgtttttgtcatttcacttgggaccgagca 194  Q
    ||||||||||||||||||  ||||||| |||||||| ||||| |||||| ||||||    
T  17344829 ctagcgtgagttaacatgcgtaggggtatttttgtcttttcagttgggagcgagca 17344884  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 35425787 - 35425824
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatcccctg 89  Q
    |||||||||| | |||||||||||||||||||||||||    
T  35425787 taaattaaagagatgagggggttcagctgcatcccctg 35425824  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 7335612 - 7335576
Alignment:
Q  142 gcgtgagttaacatgtataggggtgtttttgtcattt 178  Q
    |||||||||||||||||||||||| |||| |||||||    
T  7335612 gcgtgagttaacatgtataggggtattttggtcattt 7335576  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 5819041 - 5819088
Alignment:
Q  65 tgagggggttcagctgcatcccctggatacaagatggctccgcccctg 112  Q
    |||||||||||| |||||| |||||||| |||| ||||||||||||||    
T  5819041 tgagggggttcacctgcattccctggatgcaaggtggctccgcccctg 5819088  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 24138364 - 24138422
Alignment:
Q  52 taaattaaaggggtgagggggttcagctgcatcccctggatacaagatggctccgcccc 110  Q
    |||||||||  | ||||||||||||||||||||||||||||  | | ||||||||||||    
T  24138364 taaattaaaaagttgagggggttcagctgcatcccctggatgtatgctggctccgcccc 24138422  T

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