View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9861_1 (Length: 793)
Name: NF9861_1
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9861_1 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 220 - 765
Target Start/End: Original strand, 3037850 - 3038392
Alignment:
| Q |
220 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037850 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
3037949 |
T |
|
| Q |
320 |
ttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtagg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037950 |
ttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtagg |
3038049 |
T |
|
| Q |
420 |
aagaataacaagtgggtttgtgagatgagagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038050 |
aagaataacaagtgggtttgtgagatgagagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaa |
3038149 |
T |
|
| Q |
520 |
tggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtc |
619 |
Q |
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||||||||||||||||||| |||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038150 |
tggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtc |
3038249 |
T |
|
| Q |
620 |
gaatgatgtgatggagataaggagggcggcgatggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtg |
719 |
Q |
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| T |
3038250 |
gaatgatgcgacggagataaggagggcggcgatggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtg |
3038346 |
T |
|
| Q |
720 |
tttatggacatggaagattccaagaatatgctagaagcacaggttc |
765 |
Q |
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| T |
3038347 |
tttatggacatggaagattccaagaatatgctagaagcacaggttc |
3038392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 348 - 765
Target Start/End: Original strand, 3021109 - 3021523
Alignment:
| Q |
348 |
ccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatga |
447 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3021109 |
ccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatga |
3021208 |
T |
|
| Q |
448 |
gagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgc |
547 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3021209 |
gagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgc |
3021308 |
T |
|
| Q |
548 |
acttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgtgatggagataaggagggcg |
647 |
Q |
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|||| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
3021309 |
acttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatgcgacggagataaggagggcg |
3021408 |
T |
|
| Q |
648 |
gcgatggaggctgctcagttgtttgcggttgaagacaagcagcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaata |
747 |
Q |
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| T |
3021409 |
gcgatggaggctgctcagttgtttgcggttgaagaca---agcaatgttgtgttaccgttgaagatggagtgtttatggacatggaagattccaagaata |
3021505 |
T |
|
| Q |
748 |
tgctagaagcacaggttc |
765 |
Q |
| |
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|||||||||||||||||| |
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| T |
3021506 |
tgctagaagcacaggttc |
3021523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 312 - 662
Target Start/End: Original strand, 3030287 - 3030637
Alignment:
| Q |
312 |
acaagttcttcagaagtgattttggcacctgcaagaccaaagaagagagcaggtagaagagtgctcaaggagacaagacatccggtgtaccgaggagtac |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
3030287 |
acaagttcttcagaagtgattttggcatctgcaagaccaaagaagagagcagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtac |
3030386 |
T |
|
| Q |
412 |
gacgtaggaagaataacaagtgggtttgtgagatgagagttcccaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaac |
511 |
Q |
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|| | ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3030387 |
gaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaac |
3030486 |
T |
|
| Q |
512 |
tcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttg |
611 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
3030487 |
tcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgacgttg |
3030586 |
T |
|
| Q |
612 |
ccggagtcgaatgatgtgatggagataaggagggcggcgatggaggctgct |
662 |
Q |
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|||||||| ||||||| | ||||||||||||| || ||||||||||||||| |
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| T |
3030587 |
ccggagtcaaatgatgcggtggagataaggagagctgcgatggaggctgct |
3030637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 3037658 - 3037826
Alignment:
| Q |
18 |
atagtgaaagccgtggccaatgggcttccattagactggcccacttagagacaatccaatccaactgtcacccgcgttcacgtgtcacatacgtggggat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3037658 |
atagtgaaagccgtggccaatgggcttccattagactggcccacttagagacaatccaatccaactgtcacccgcgttcacgtgtcacatacgtggggat |
3037757 |
T |
|
| Q |
118 |
gttcttcatgcgacctcatcaataagctatataataaactccacacacactctcacttcctcagtagcca |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3037758 |
gttcttcatgcgacctcatcaataagctatataataaactccacacacactctcacttcc-cagtagcca |
3037826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 3021015 - 3021072
Alignment:
| Q |
239 |
aatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaaca |
296 |
Q |
| |
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||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| |
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| T |
3021015 |
aatggatttcttcatgtcatcttttggtgagtactcagacacttcttcttcagaaaca |
3021072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 486 - 604
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
486 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaggggaaatcagcctgtcttaattttg |
585 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| || ||| || |||||||| ||||||||||||| |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
|
| Q |
586 |
ctgactctgcatggcggtt |
604 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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