View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9861_2 (Length: 420)

Name: NF9861_2
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9861_2
NF9861_2
[»] chr3 (4 HSPs)
chr3 (2-418)||(1726427-1726834)
chr3 (111-190)||(13361622-13361701)
chr3 (111-190)||(13293506-13293585)
chr3 (382-418)||(13293244-13293280)
[»] chr7 (2 HSPs)
chr7 (114-242)||(4447384-4447512)
chr7 (16-229)||(10347322-10347535)
[»] chr6 (2 HSPs)
chr6 (98-334)||(17235652-17235888)
chr6 (147-204)||(25723558-25723615)
[»] chr4 (2 HSPs)
chr4 (111-184)||(11450232-11450305)
chr4 (142-190)||(12407100-12407148)
[»] chr8 (1 HSPs)
chr8 (98-235)||(17932256-17932393)
[»] chr2 (1 HSPs)
chr2 (142-184)||(22677941-22677983)
[»] chr1 (1 HSPs)
chr1 (142-192)||(23976337-23976387)
[»] scaffold0011 (1 HSPs)
scaffold0011 (151-204)||(67272-67325)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 2 - 418
Target Start/End: Complemental strand, 1726834 - 1726427
Alignment:
Q  2 catcaaagtcataatggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaatctttacttc 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  1726834 catcaaagtcatattggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgaatctaattttgaatctttatttc 1726735  T
Q  102 ttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatcct 201  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  1726734 ttagagatttccttctttgacttgttcgtctgcaactctagacaatcagcaatgaagtgaccaggtttcttgctgttgaagaaacccttctaatcatcct 1726635  T
Q  202 tctcatccttgtagcctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttaaatattttggtcagaaatgtcatct 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            
T  1726634 tctcatccttgtagtctgatcctttagatccactagttctagttggaaacatttttcttcttggtaaggtacttgaatattttggtcagaaa-------- 1726543  T
Q  302 cttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatatcccttagcgggttcatctccaa 401  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  1726542 -ttcagcatctaacccatcttcagattctccatctagagtctcttctgactcaacaacttgaagagcttagtagatttcccttagcggattcatctccaa 1726444  T
Q  402 caagctccatctcatga 418  Q
    |||||||||||||||||    
T  1726443 caagctccatctcatga 1726427  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 13361622 - 13361701
Alignment:
Q  111 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 190  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13361622 tccttctttgacttgtctttctgtaactctagacaatcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13361701  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 13293585 - 13293506
Alignment:
Q  111 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 190  Q
    ||||||||| |||||||  |||| ||||||||||| ||||||||||| ||| || ||||||||| |  ||||||||||||    
T  13293585 tccttctttcacttgtctttctgtaactctagacagtcagcaatgaaatgaccaagtttcttgcagcggaagcaaccctt 13293506  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 13293280 - 13293244
Alignment:
Q  382 cttagcgggttcatctccaacaagctccatctcatga 418  Q
    |||||| |||||||||||||||||||| |||||||||    
T  13293280 cttagcaggttcatctccaacaagctcaatctcatga 13293244  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 4447384 - 4447512
Alignment:
Q  114 ttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttctcatccttgt 213  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||| ||||||| || ||| ||||   | ||||    
T  4447384 ttctttgacttgtccttctgcaactctagacagtcagtaatgaagtgatcaggtttcttgcagttgaagcatcccttctgattatctttctagcctttgt 4447483  T
Q  214 agcctgatcctttagatccactagttcta 242  Q
    | || |||||||| |||| |||| |||||    
T  4447484 atccagatccttttgatctactacttcta 4447512  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 10347535 - 10347322
Alignment:
Q  16 tggcttcttcttcattagtttcttcatcaagttcatcccatgttgacatgaaacctttcttgactctaattttgaatctttacttcttagagatttcctt 115  Q
    ||||||||||||||| ||||| ||||| ||| || |||||||||| ||||  || ||| |||||| |  |||||||  | | |||||||||| |||| ||    
T  10347535 tggcttcttcttcatcagtttattcatgaagatcttcccatgttgccatgtgacttttattgactttgcttttgaaattctccttcttagagctttcatt 10347436  T
Q  116 ctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttctcatccttgtag 215  Q
    |||| |||||| | || | |||||| |||| |||| |||||||||  || |||| ||||  ||||||||||| ||    |||||||||| ||| |||||     
T  10347435 ctttaacttgttcttcagtaactctggacagtcagaaatgaagtggacaagttttttgcaattgaagcaaccttttcggtcatccttcttatctttgtat 10347336  T
Q  216 cctgatcctttaga 229  Q
    ||||||||||||||    
T  10347335 cctgatcctttaga 10347322  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 334
Target Start/End: Original strand, 17235652 - 17235888
Alignment:
Q  98 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 197  Q
    ||||||||||||||| ||||||| || |||| |||||||||||||  | ||  | || |||||| || |||||||||  |||||| |  |||||| ||||    
T  17235652 cttcttagagatttctttctttggctcgtccttctgcaactctaggaagtcgtctataaagtgaccaggtttcttgcaattgaagtattccttctgatca 17235751  T
Q  198 tccttctcatccttgtagcctgatcctttagatccactagttctagttggaaacatttttcttctt--ggtaaggtacttaaatattttggtcagaaatg 295  Q
    || |||| || |||||| |  ||||||||  ||  || | |||||  |  ||||||||| ||||||  ||| ||||||| | || |||||||||||||||    
T  17235752 tctttcttatacttgtaactcgatcctttttatatacaacttctacctaaaaacatttt-cttcttttggtcaggtactgatatcttttggtcagaaatg 17235850  T
Q  296 tcatctcttcagcatctaacccatcttcagattctccat 334  Q
    ||||||||| |||||||||  ||||||||||||||||||    
T  17235851 tcatctctttagcatctaa-tcatcttcagattctccat 17235888  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 25723615 - 25723558
Alignment:
Q  147 tcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttct 204  Q
    ||||||||||| ||| || ||||||||| ||||||||| ||||||| ||| |||||||    
T  25723615 tcagcaatgaaatgaccaggtttcttgcagttgaagcaccccttctgatcttccttct 25723558  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 11450305 - 11450232
Alignment:
Q  111 tccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 184  Q
    |||||||| ||||||||| |||| |||||| |||||||| ||||||| |||||| |||||||||||||||||||    
T  11450305 tccttcttcgacttgtccttctgtaactctggacaatcaacaatgaaatgatcaagtttcttgctgttgaagca 11450232  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 12407148 - 12407100
Alignment:
Q  142 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaaccctt 190  Q
    |||||||||||||||||||| || ||||||| | ||||||||| |||||    
T  12407148 gacaatcagcaatgaagtgaccaggtttcttacagttgaagcatccctt 12407100  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 17932393 - 17932256
Alignment:
Q  98 cttcttagagatttccttctttgacttgtccgtctgcaactctagacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttctaatca 197  Q
    |||||||||| |||| |||||  |||||||| | ||||| ||| |||||  || ||| | |||| || | ||||||| || |||||||||||||| ||||    
T  17932393 cttcttagagctttctttcttacacttgtccttttgcaaatctggacaacaagtaatcacgtgaccaggcttcttgcagtggaagcaacccttctgatca 17932294  T
Q  198 tccttctcatccttgtagcctgatcctttagatccact 235  Q
    ||||||| ||||||||||| ||||| ||| || |||||    
T  17932293 tccttcttatccttgtagcttgatcatttggacccact 17932256  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 22677941 - 22677983
Alignment:
Q  142 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagca 184  Q
    |||||||||||||||||||| || ||||||||| |||||||||    
T  22677941 gacaatcagcaatgaagtgaccaagtttcttgcagttgaagca 22677983  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 23976387 - 23976337
Alignment:
Q  142 gacaatcagcaatgaagtgatcatgtttcttgctgttgaagcaacccttct 192  Q
    |||||||||||||||||||| ||  |||||||| ||||||||| |||||||    
T  23976387 gacaatcagcaatgaagtgaccagatttcttgcagttgaagcatcccttct 23976337  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 67325 - 67272
Alignment:
Q  151 caatgaagtgatcatgtttcttgctgttgaagcaacccttctaatcatccttct 204  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||| ||| |||||||    
T  67325 caatgaagtgaacatgcttcttgcagttgaagcatcccttctgatcttccttct 67272  T

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