View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9861_3 (Length: 403)

Name: NF9861_3
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9861_3
NF9861_3
[»] chr5 (43 HSPs)
chr5 (13-343)||(7591087-7591418)
chr5 (165-349)||(22553653-22553841)
chr5 (158-294)||(2802640-2802778)
chr5 (157-344)||(6633591-6633782)
chr5 (157-344)||(18432377-18432568)
chr5 (158-294)||(2796479-2796617)
chr5 (155-294)||(39052842-39052983)
chr5 (155-244)||(12378790-12378879)
chr5 (169-299)||(35727272-35727403)
chr5 (158-245)||(40692745-40692832)
chr5 (163-229)||(25715544-25715610)
chr5 (166-251)||(31075321-31075407)
chr5 (217-349)||(38147459-38147595)
chr5 (158-243)||(40331191-40331276)
chr5 (187-329)||(41455191-41455337)
chr5 (155-246)||(7487023-7487113)
chr5 (208-292)||(42920696-42920782)
chr5 (158-287)||(14652747-14652877)
chr5 (163-354)||(23418264-23418457)
chr5 (155-251)||(27571762-27571855)
chr5 (158-294)||(4414510-4414647)
chr5 (156-354)||(11402884-11403086)
chr5 (158-294)||(10090518-10090656)
chr5 (165-236)||(40109335-40109406)
chr5 (159-294)||(41805480-41805617)
chr5 (155-244)||(18845803-18845892)
chr5 (208-354)||(34111376-34111521)
chr5 (158-341)||(34880927-34881114)
chr5 (169-294)||(36568015-36568141)
chr5 (166-225)||(2589300-2589359)
chr5 (363-403)||(7591035-7591077)
chr5 (208-294)||(19402574-19402661)
chr5 (155-283)||(38176147-38176277)
chr5 (155-283)||(38203371-38203501)
chr5 (16-86)||(11402833-11402903)
chr5 (20-86)||(18432329-18432395)
chr5 (209-251)||(26690148-26690190)
chr5 (209-251)||(26959880-26959922)
chr5 (21-86)||(2423058-2423123)
chr5 (275-349)||(2423216-2423292)
chr5 (267-349)||(2589394-2589478)
chr5 (29-86)||(34111546-34111603)
chr5 (158-294)||(25495378-25495519)
[»] chr1 (41 HSPs)
chr1 (155-354)||(35979869-35980071)
chr1 (155-349)||(35992197-35992394)
chr1 (155-344)||(36203052-36203246)
chr1 (158-354)||(25507166-25507365)
chr1 (187-349)||(6693702-6693866)
chr1 (158-349)||(8165143-8165337)
chr1 (155-351)||(10847124-10847324)
chr1 (170-349)||(6248374-6248557)
chr1 (158-351)||(9330687-9330884)
chr1 (155-261)||(17652031-17652139)
chr1 (157-336)||(17989332-17989515)
chr1 (187-325)||(3937081-3937220)
chr1 (158-251)||(9249791-9249884)
chr1 (158-294)||(11073027-11073164)
chr1 (187-329)||(40094785-40094929)
chr1 (158-349)||(44056022-44056217)
chr1 (170-294)||(26344704-26344830)
chr1 (158-251)||(19051410-19051503)
chr1 (158-294)||(52380390-52380529)
chr1 (170-294)||(12973868-12973994)
chr1 (16-83)||(18310177-18310244)
chr1 (155-236)||(50951754-50951835)
chr1 (170-287)||(25559682-25559801)
chr1 (170-270)||(34914432-34914531)
chr1 (192-251)||(15881895-15881954)
chr1 (160-243)||(27350918-27351001)
chr1 (187-294)||(50471417-50471525)
chr1 (155-251)||(32937764-32937863)
chr1 (172-294)||(36782026-36782152)
chr1 (166-251)||(41751516-41751601)
chr1 (165-205)||(9961932-9961972)
chr1 (158-294)||(23474758-23474895)
chr1 (158-344)||(32909974-32910164)
chr1 (155-251)||(52829094-52829190)
chr1 (165-294)||(13056191-13056321)
chr1 (244-344)||(18834165-18834267)
chr1 (261-344)||(26063816-26063901)
chr1 (20-86)||(35992374-35992440)
chr1 (172-236)||(11537101-11537166)
chr1 (158-294)||(35375455-35375594)
chr1 (158-214)||(25865752-25865808)
[»] chr6 (18 HSPs)
chr6 (157-317)||(891974-892138)
chr6 (155-349)||(19134703-19134901)
chr6 (161-294)||(32190339-32190474)
chr6 (155-349)||(14564710-14564905)
chr6 (187-294)||(29048864-29048972)
chr6 (157-350)||(12108178-12108375)
chr6 (155-354)||(30752856-30753058)
chr6 (157-251)||(28633231-28633325)
chr6 (159-294)||(9686336-9686475)
chr6 (171-294)||(13092298-13092423)
chr6 (170-294)||(22414109-22414236)
chr6 (189-354)||(7169675-7169847)
chr6 (208-294)||(4577429-4577518)
chr6 (174-294)||(24644611-24644733)
chr6 (158-349)||(13531871-13532069)
chr6 (208-294)||(8064827-8064914)
chr6 (279-354)||(13858991-13859068)
chr6 (227-294)||(16971411-16971480)
[»] chr4 (38 HSPs)
chr4 (155-349)||(32222912-32223109)
chr4 (155-350)||(35232894-35233093)
chr4 (158-355)||(4688969-4689170)
chr4 (155-354)||(49641118-49641322)
chr4 (155-294)||(48338629-48338770)
chr4 (158-241)||(48602221-48602304)
chr4 (155-294)||(18536316-18536457)
chr4 (163-244)||(36106179-36106260)
chr4 (170-329)||(21069357-21069522)
chr4 (157-294)||(46471714-46471853)
chr4 (165-294)||(14867062-14867193)
chr4 (155-294)||(48685036-48685178)
chr4 (158-354)||(3666663-3666863)
chr4 (158-251)||(5122082-5122175)
chr4 (170-349)||(41325696-41325879)
chr4 (158-251)||(53934936-53935028)
chr4 (155-251)||(48293131-48293224)
chr4 (170-294)||(29233050-29233176)
chr4 (165-236)||(45226668-45226739)
chr4 (158-251)||(27743488-27743582)
chr4 (158-294)||(6102176-6102313)
chr4 (158-294)||(8484961-8485105)
chr4 (158-251)||(35014563-35014656)
chr4 (210-294)||(45464500-45464582)
chr4 (16-84)||(7784321-7784389)
chr4 (186-287)||(18399340-18399443)
chr4 (211-292)||(41312330-41312413)
chr4 (155-242)||(25686171-25686257)
chr4 (185-251)||(41260424-41260490)
chr4 (171-251)||(7783890-7783969)
chr4 (211-287)||(7763762-7763840)
chr4 (158-205)||(42199079-42199126)
chr4 (189-251)||(4642766-4642828)
chr4 (187-286)||(23625563-23625664)
chr4 (158-243)||(28148053-28148139)
chr4 (16-86)||(35233073-35233142)
chr4 (192-294)||(1564718-1564825)
chr4 (16-88)||(15724128-15724200)
[»] scaffold0664 (1 HSPs)
scaffold0664 (165-329)||(6277-6445)
[»] chr2 (24 HSPs)
chr2 (155-349)||(1331279-1331475)
chr2 (157-294)||(13194190-13194331)
chr2 (157-294)||(22014248-22014386)
chr2 (157-349)||(41166442-41166638)
chr2 (170-289)||(5862318-5862440)
chr2 (155-354)||(12041185-12041389)
chr2 (159-354)||(27301086-27301285)
chr2 (158-354)||(15320184-15320385)
chr2 (155-294)||(36500284-36500423)
chr2 (158-251)||(30514644-30514735)
chr2 (158-349)||(44085776-44085973)
chr2 (217-294)||(20496736-20496814)
chr2 (157-251)||(36964272-36964368)
chr2 (158-214)||(11377398-11377454)
chr2 (16-86)||(22014196-22014266)
chr2 (169-325)||(11051029-11051191)
chr2 (155-251)||(17763033-17763128)
chr2 (208-244)||(41983920-41983956)
chr2 (155-225)||(30759360-30759430)
chr2 (171-294)||(31719736-31719860)
chr2 (218-294)||(1536933-1537012)
chr2 (97-158)||(17623625-17623686)
chr2 (189-246)||(28790830-28790887)
chr2 (49-86)||(36964253-36964290)
[»] chr8 (23 HSPs)
chr8 (158-294)||(28441758-28441896)
chr8 (187-294)||(12193118-12193225)
chr8 (187-294)||(12437546-12437653)
chr8 (171-294)||(15452322-15452447)
chr8 (158-297)||(40436726-40436867)
chr8 (158-294)||(41346199-41346337)
chr8 (157-283)||(24681754-24681884)
chr8 (164-354)||(27674814-27675008)
chr8 (189-349)||(1271453-1271617)
chr8 (185-251)||(3129350-3129416)
chr8 (170-272)||(4785541-4785645)
chr8 (158-246)||(37162357-37162446)
chr8 (159-294)||(12073876-12074010)
chr8 (164-251)||(9012536-9012623)
chr8 (163-293)||(44337042-44337174)
chr8 (209-349)||(12659869-12660012)
chr8 (161-294)||(18754980-18755116)
chr8 (157-251)||(14185572-14185666)
chr8 (153-294)||(28801854-28802000)
chr8 (267-349)||(3155623-3155707)
chr8 (160-294)||(11219245-11219383)
chr8 (16-86)||(40436673-40436743)
chr8 (17-85)||(24681867-24681934)
[»] chr7 (42 HSPs)
chr7 (159-334)||(6879711-6879890)
chr7 (155-349)||(524467-524665)
chr7 (155-349)||(46147496-46147693)
chr7 (157-354)||(43202703-43202903)
chr7 (174-349)||(27456631-27456811)
chr7 (158-354)||(48643076-48643274)
chr7 (157-294)||(23032969-23033107)
chr7 (186-354)||(29211212-29211380)
chr7 (169-349)||(40849156-40849342)
chr7 (198-294)||(47646417-47646515)
chr7 (158-294)||(22298820-22298957)
chr7 (155-344)||(11399408-11399601)
chr7 (158-349)||(11834062-11834259)
chr7 (158-294)||(8117938-8118074)
chr7 (16-86)||(2734573-2734642)
chr7 (187-349)||(27100202-27100367)
chr7 (187-349)||(27177936-27178101)
chr7 (16-86)||(48643023-48643093)
chr7 (170-329)||(20334893-20335056)
chr7 (158-251)||(23729660-23729753)
chr7 (163-244)||(26214813-26214894)
chr7 (186-251)||(26956159-26956224)
chr7 (165-232)||(7528921-7528986)
chr7 (170-294)||(7697589-7697718)
chr7 (211-251)||(16359573-16359613)
chr7 (167-349)||(29628510-29628697)
chr7 (155-251)||(35495693-35495788)
chr7 (155-218)||(23675663-23675726)
chr7 (209-283)||(31011432-31011507)
chr7 (155-205)||(2734622-2734672)
chr7 (222-354)||(23410812-23410948)
chr7 (155-241)||(26524647-26524733)
chr7 (155-294)||(27214848-27214988)
chr7 (210-251)||(2854584-2854625)
chr7 (158-251)||(30079277-30079370)
chr7 (210-294)||(1812820-1812906)
chr7 (22-85)||(10338586-10338649)
chr7 (220-294)||(25007611-25007688)
chr7 (165-232)||(30855391-30855458)
chr7 (270-329)||(23675771-23675832)
chr7 (17-85)||(16535526-16535594)
chr7 (17-85)||(16630068-16630136)
[»] scaffold0204 (1 HSPs)
scaffold0204 (155-294)||(26151-26292)
[»] chr3 (32 HSPs)
chr3 (158-354)||(44651251-44651451)
chr3 (158-349)||(22472663-22472858)
chr3 (170-329)||(48168973-48169136)
chr3 (158-294)||(42362875-42363011)
chr3 (170-294)||(55467298-55467422)
chr3 (161-289)||(4280579-4280709)
chr3 (163-294)||(10481275-10481406)
chr3 (169-294)||(2832041-2832168)
chr3 (158-294)||(25918909-25919047)
chr3 (158-349)||(26758516-26758713)
chr3 (170-294)||(54122623-54122749)
chr3 (155-223)||(4669017-4669085)
chr3 (211-294)||(51660657-51660742)
chr3 (158-294)||(50578654-50578792)
chr3 (171-294)||(8355630-8355756)
chr3 (158-245)||(17144439-17144527)
chr3 (157-294)||(20846762-20846901)
chr3 (165-293)||(21562850-21562977)
chr3 (158-329)||(45629480-45629656)
chr3 (159-224)||(44662226-44662291)
chr3 (170-294)||(46253107-46253232)
chr3 (216-293)||(38651686-38651765)
chr3 (170-344)||(45914805-45914985)
chr3 (158-205)||(5640474-5640521)
chr3 (158-253)||(27054367-27054462)
chr3 (158-205)||(55130030-55130077)
chr3 (16-86)||(4280523-4280593)
chr3 (20-86)||(20846714-20846780)
chr3 (158-244)||(36330383-36330469)
chr3 (15-85)||(51660895-51660965)
chr3 (157-218)||(38681510-38681571)
chr3 (155-200)||(52632311-52632356)
[»] scaffold0688 (4 HSPs)
scaffold0688 (165-283)||(3067-3182)
scaffold0688 (165-283)||(4734-4849)
scaffold0688 (163-283)||(1471-1589)
scaffold0688 (163-283)||(8040-8158)
[»] scaffold0001 (1 HSPs)
scaffold0001 (165-341)||(427941-428121)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 7591418 - 7591087
Alignment:
Q  13 aaaatagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttataaagggcgcggtgcactaaagcttcc 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7591418 aaaatagaccaaatttaaaacatgaataaaaggtattcatattatgtaagagatataaatgactaagattttataaagggcacggtgcactaaagcttcc 7591319  T
Q  113 acgtacgcaagatctgggaaggagctccactttttggtgtattgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcattt 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  7591318 acgtacgcaggatctgggaaggagctccactttttggtgtattgtaaaagactaagattttatcattatctaaaagttcaagtagcacataaagacattt 7591219  T
Q  213 ttgaaataaaaagtaaagaagaaatttaacaagaa-aaaacatctcatgttattgaagttttcattgagtttctatgagtatttgtatgtgacatacatt 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7591218 ttgaaataaaaagtaaagaagaaatttaacaagaaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatttgtatgtgacatagatt 7591119  T
Q  312 ttattagtatttttcttaagttgcgatttggt 343  Q
    | ||||||||||||||||||||||| ||||||    
T  7591118 tgattagtatttttcttaagttgcggtttggt 7591087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 349
Target Start/End: Original strand, 22553653 - 22553841
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgtt 262  Q
    ||||||||||||||| ||| |||||||||||| ||||||||   ||||| |||||||||||||||||||||| ||||||  |||||||| || |||| ||    
T  22553653 taagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatttt 22553752  T
Q  263 attgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||||||| ||||||||||||||||||||  | || |||| |||  ||| |||||| ||||||||| |||||| ||||||| ||||    
T  22553753 atagaagttttaattgagtttctatgagtattgatctaggtgagatatgtttaattagtgtttttcttatgttgcggtttggtttggtt 22553841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 2802778 - 2802640
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||||||| ||||||| ||| | | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||| |      
T  2802778 aaaagactaaaattttataattctataaaatttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacg 2802679  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||  |||||||| |||||||| ||||||||||    
T  2802678 tcattttatcaaagttttcgttgagtttttatgagtatt 2802640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 344
Target Start/End: Original strand, 6633591 - 6633782
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||||| ||||||||||||||| |||  ||||||||||||||||| ||  |||||||||||| ||||| |||||| ||| ||| ||  |||||||| ||    
T  6633591 taaaagattaagattttatcattctctacaagttcaagtagcacatcaatacatttttgaaatcaaaagcaaagaaaaaacttatcaacagaaaaaatat 6633690  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggtt 344  Q
     |||| ||||  |||||||||||||||||||||||||||| ||  | |||||||| |||| ||||   |||||||||  ||||| |||||||    
T  6633691 gtcattttataaaagttttcattgagtttctatgagtattggtccacgtgacatagatttaattaaagtttttcttatattgcggtttggtt 6633782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 344
Target Start/End: Original strand, 18432377 - 18432568
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacat 254  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||||||    ||||||||||||||||| |||||| ||| |||||    ||||||| ||    
T  18432377 taaaagactaagactttatcattctctaaaagttcaagtagcacataactatatttttgaaataaaaagcaaagaaaaaacttaacgtgggaaaaaatat 18432476  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatttgtat--gtgacatacattttattagtatttttcttaagttgcgatttggtt 344  Q
     |||| ||||  ||||||||||||| |||||||||||||| ||||  |||||||| | || |||| | ||||| ||| |||||| |||||||    
T  18432477 gtcattttataaaagttttcattgattttctatgagtattggtataggtgacatagacttaattaatgttttttttatgttgcggtttggtt 18432568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 2796617 - 2796479
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||||||| ||||||| ||| | | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||  |||||||| |      
T  2796617 aaaagactaaaattttataattctataaaatttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaatttaacaagagaaaaaatacg 2796518  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||  |||||| | |||||||| ||||||||||    
T  2796517 tcattttatcaaagtttccgttgagtttttatgagtatt 2796479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 39052842 - 39052983
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaa--aac 252  Q
    |||| |||| ||||||||||||||  | | |||||||||||||||||||||   |||||| |||||||| |||||||||||||||||||||| ||  ||     
T  39052842 tgtataagattaagattttatcatactataaaagttcaagtagcacataaatatatttttaaaataaaatgtaaagaagaaatttaacaagagaacaaat 39052941  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || | || ||||  ||||||||| ||||||||||||||||||    
T  39052942 atataattttataaaagttttcactgagtttctatgagtatt 39052983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 12378879 - 12378790
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    ||||||| ||||||||||||||||| | | |||||| ||||||||||||||  |||||||||||||||||| |||||||||| |||||||    
T  12378879 tgtaaaatactaagattttatcattctttaaaagtttaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaa 12378790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 299
Target Start/End: Original strand, 35727272 - 35727403
Alignment:
Q  169 attttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa-gaaaaaacatctcatgttattga 267  Q
    ||||||||||| ||| |||||||||||| || |||||   |||||||||||||||||| ||||| ||| |||||||  ||||||||| |||| ||||  |    
T  35727272 attttatcattctctaaaagttcaagtaacatataaacatatttttgaaataaaaagttaagaaaaaacttaacaataaaaaaacatgtcattttataaa 35727371  T
Q  268 agttttcattgagtttctatgagtatttgtat 299  Q
    ||||  |||||||||||||||| |||| ||||    
T  35727372 agttaccattgagtttctatgaatattggtat 35727403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 40692745 - 40692832
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag 245  Q
    ||||||||||||||||| ||||  || ||||||||||||||| || ||  ||||||||||||||||||||||||||||| ||| ||||    
T  40692745 aaaagactaagattttaacattcactaaaagttcaagtagcatatgaatacatttttgaaataaaaagtaaagaagaaacttaccaag 40692832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 229
Target Start/End: Original strand, 25715544 - 25715610
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaa 229  Q
    ||||||||||||||||| ||| |||||||||||||||||||||  ||||||| ||||||||||||||    
T  25715544 actaagattttatcattctctaaaagttcaagtagcacataaatacattttttaaataaaaagtaaa 25715610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 31075407 - 31075321
Alignment:
Q  166 aagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaata-aaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||| ||| |||||||||||| ||||||||  || |||||||||| |||||||||||||||| ||||||||| ||||    
T  31075407 aagattttatcattctctaaaagttcaagtaacacataaatacacttttgaaataaaaaagtaaagaagaaacttaacaagagaaaa 31075321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 349
Target Start/End: Original strand, 38147459 - 38147595
Alignment:
Q  217 aataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattt 312  Q
    |||||||||||||| ||||||||||||  |||||||| || |||| ||||  ||||||||||||||||||||||| ||||  | ||||||||| |  |||    
T  38147459 aataaaaagtaaagcagaaatttaacaagagaaaaaatatatcattttataaaagttttcattgagtttctatgaatattggtctatgtgacacatgttt 38147558  T
Q  313 tattagtatttttcttaagttgcgatttggttcggtt 349  Q
     |||||| ||||||||| |||| | ||||||| ||||    
T  38147559 aattagtgtttttcttatgttggggtttggtttggtt 38147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 40331276 - 40331191
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca 243  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||  ||||||||  || ||||||| ||||||    
T  40331276 aaaagactaagattttatcattctctaaaagttcaagtagcacataaatacatttttacaataaaaaacaatgaagaaacttaaca 40331191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 41455191 - 41455337
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattgaagttttcattgagtttc 284  Q
    ||||||||||  ||||||   ||||||||||| |||||||| |||| ||| |||||||||  ||||| || |||| ||||| |||||| |||||||||||    
T  41455191 agttcaagtaatacataagtacatttttgaaagaaaaagtacagaaaaaagttaacaagagaaaaaatatgtcattttattaaagtttccattgagtttc 41455290  T
Q  285 tatgagtatttgt--atgtgacatacattttattagtatttttctta 329  Q
    |||||||||| ||  | |||| ||| |||| |||||| |||||||||    
T  41455291 tatgagtattggtccaagtgatatatatttaattagtgtttttctta 41455337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 7487113 - 7487023
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga 246  Q
    |||| |||| ||||||||||||||| ||| ||||||||||||| ||| |||  ||||||| |||| |||||||||||||||| |||||||||    
T  7487113 tgtataagattaagattttatcattttctaaaagttcaagtagtacacaaatacatttttaaaat-aaaagtaaagaagaaaattaacaaga 7487023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 42920782 - 42920696
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagta 292  Q
    ||||||||| ||||||||||||||||||| ||||||  |||||||| || |||| ||||  ||||||| ||||||||||||||||||    
T  42920782 catttttgatataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttataaaagttttaattgagtttctatgagta 42920696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 14652747 - 14652877
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatc-t 256  Q
    |||||| ||||||||||||||| ||| ||| |||||||| |||| |||    ||||| |||||||||||||||||  ||||||||||||||||| |   |    
T  14652747 aaaagattaagattttatcattctctaaaatttcaagtaacacaaaaatatgttttttaaataaaaagtaaagaaagaatttaacaagaaaaaaaaaagt 14652846  T
Q  257 catgttattgaagttttcattgagtttctat 287  Q
    ||| ||||  |||||||||||| ||||||||    
T  14652847 cattttataaaagttttcattgcgtttctat 14652877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 354
Target Start/End: Original strand, 23418264 - 23418457
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatg 260  Q
    ||||||||||||||||| ||| ||||| ||| ||  |||||||   ||||| ||| |||||||||||||||||| ||||||  |||||||| || |||      
T  23418264 actaagattttatcattctctaaaagtgcaatta--acataaaaatattttagaagtaaaaagtaaagaagaaacttaacaagagaaaaaatatgtcagt 23418361  T
Q  261 ttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    |||| ||||||| ||||  |||||||||||| ||  | || ||||||||   || |||| | ||||||||| |||||| ||||||||||| |||||    
T  23418362 ttatagaagtttgcattttgtttctatgagtgttggtctaggtgacatatcattaattaatgtttttcttatgttgcggtttggttcggtcggtaa 23418457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 27571855 - 27571762
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||||||||  |||||||||   |||||| |||||||||| |||| |||| ||||    
T  27571855 tgtaaaagattaagattttattattctctaaaagttcaagtagcacataaatacatttttga---aaaaagcaaagaagaaacttaataagagaaaa 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 4414510 - 4414647
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatct 256  Q
    ||||||||||||||||| ||||  || ||  |||||||| || || ||  || ||||||||||||||| |||||||||| ||| ||||| ||||| |  |    
T  4414510 aaaagactaagattttaacattcactaaagattcaagtaacatatgaatacacttttgaaataaaaagcaaagaagaaacttatcaagagaaaaaaaaat 4414609  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| ||||  ||||||||||||||||||||| ||||||    
T  4414610 cattttataaaagttttcattgagtttctataagtatt 4414647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 354
Target Start/End: Original strand, 11402884 - 11403086
Alignment:
Q  156 gtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtc-atttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||| | ||  |  ||||| |||||||||| |||||| |||| |||||  ||||||||     
T  11402884 gtaaaagactaagattttatcattctcaaaaatttcaagtagcacgtgaatacgtttttttaaataaaaagcaaagaa-aaatctaacaagagaaaaaat 11402982  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtat--ttgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttg 350  Q
    || |||| ||||  |||||| |||||| ||| |||||||||   | || |||| |||  ||| ||||  |||||||||| |||||| |||||||||||||    
T  11402983 atgtcattttatacaagtttccattgaatttatatgagtatcggtctaggtgagatatgtttaattaacatttttcttatgttgcggtttggttcggttg 11403082  T
Q  351 gtaa 354  Q
    ||||    
T  11403083 gtaa 11403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 10090518 - 10090656
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||||||| |||  |||||| ||| | |||| ||||||||||||||  ||||||| | | |||||| |||||||||| | ||||  |||||||| ||     
T  10090518 aaaagactaaaattaaatcattctctaagagtttaagtagcacataaatacattttttatagaaaaagcaaagaagaaactcaacaagagaaaaaagatg 10090617  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||| |||||||| |||| ||||| ||||||||    
T  10090618 tcattttattaaagttttctttgaatttctctgagtatt 10090656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 40109406 - 40109335
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaa 236  Q
    ||||||||||||||| | | ||||||||| |||||| ||||  |||||||||||||||||| ||||||||||    
T  40109406 taagattttatcattctatgaaagttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaa 40109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 41805617 - 41805480
Alignment:
Q  159 aaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatct 256  Q
    ||||| |||||||||| ||||  || ||||||||||||||| ||  |  || |||||||||||||| ||||||||||| ||| ||  ||||||||  | |    
T  41805617 aaagattaagattttaacattcactaaaagttcaagtagcatatgtatacacttttgaaataaaaaataaagaagaaacttatcaagagaaaaaatgtgt 41805518  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| ||||  |||||| |||||||||||||| ||||||    
T  41805517 cattttataaaagtttccattgagtttctataagtatt 41805480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 18845803 - 18845892
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    |||||||||||||||||| || ||| | | ||||||||| | ||| |||||  ||||||| |||||||| | ||||||||||||||||||    
T  18845803 tgtaaaagactaagatttcataattctttaaaagttcaaattgcatataaatacatttttaaaataaaaggcaaagaagaaatttaacaa 18845892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 354
Target Start/End: Complemental strand, 34111521 - 34111376
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgaca 305  Q
    |||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||  |||| | ||||||||||  |||||||||  | || |||| |    
T  34111521 catttttgaaataaaaagcaaagaagaaacttaacaagaaaaaa-atgtcattttataaaagtgtccattgagttt-aatgagtattagtttaggtgata 34111424  T
Q  306 tacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    ||  ||| |||| | ||||||||| |||||| ||||||| |||||||||    
T  34111423 tatgtttaattaat-tttttcttatgttgcggtttggtttggttggtaa 34111376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 341
Target Start/End: Complemental strand, 34881114 - 34880927
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaata-aaaagtaaagaagaaatttaaca-agaaaaaacatc 255  Q
    |||| ||||||||||||||||| ||| ||| ||||||| |||||||||   | |||||||||| ||||| |||||||||| ||| || || ||||| ||     
T  34881114 aaaaaactaagattttatcattctctaaaaattcaagtggcacataaatatacttttgaaataaaaaagcaaagaagaaacttaccacaggaaaaatatg 34881015  T
Q  256 tca-tgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttg 341  Q
    ||| | ||||  |||||| |||||||||| ||||||||||  | || ||| |||| |||| |||| | ||||||||| |||||| ||||    
T  34881014 tcatttttataaaagtttccattgagttt-tatgagtattggtttaagtggcatatatttaattaatgtttttcttatgttgcggtttg 34880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 294
Target Start/End: Original strand, 36568015 - 36568141
Alignment:
Q  169 attttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattg 266  Q
    ||||||||||| ||| | ||||||||||| |||||||  ||||||||||| |||||   ||||||| | ||||||  |||||||| || ||||  |||      
T  36568015 attttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaa-acaagaagacacttaacaagagaaaaaatatgtcattgtatca 36568113  T
Q  267 aagttttcattgagtttctatgagtatt 294  Q
    |||||| |||||||||| ||||||||||    
T  36568114 aagtttccattgagtttttatgagtatt 36568141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 2589300 - 2589359
Alignment:
Q  166 aagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaag 225  Q
    |||||||||||||| | | ||||||||| | |||||||||  ||||||||||||||||||    
T  2589300 aagattttatcattctttaaaagttcaaattgcacataaatacatttttgaaataaaaag 2589359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 7591077 - 7591035
Alignment:
Q  363 cgcaaattaaaccatgcagttgagt--aaaatgatcataatac 403  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  7591077 cgcaaattaaaccatgcagttgagtaaaaaatgatcataatac 7591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 19402574 - 19402661
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||| |||||||||  ||||||||||||||| |||| ||||| || ||||  |||  || || ||||||||||||||||||||||    
T  19402574 cattttttaaataaaaaccaaagaagaaatttaataagagaaaaatatgtcatcctataaaaattctcattgagtttctatgagtatt 19402661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 38176277 - 38176147
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaac 252  Q
    ||||||||| ||| |||||||| || | | ||| ||||| |||||  ||||  ||||||| |||| ||||| ||||||||||||||||||  |||||||     
T  38176277 tgtaaaagagtaatattttatctttctataaaatttcaaatagcaattaaatacattttttaaatgaaaagaaaagaagaaatttaacaactgaaaaaat 38176178  T
Q  253 atctcatgttattgaagttttcattgagttt 283  Q
    || |||| ||||  ||||||  |||||||||    
T  38176177 atgtcattttataaaagtttcgattgagttt 38176147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 38203501 - 38203371
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaac 252  Q
    ||||||||| ||| |||||||| || | | ||| ||||| |||||  ||||  ||||||| |||| ||||| ||||||||||||||||||  |||||||     
T  38203501 tgtaaaagagtaatattttatctttctataaaatttcaaatagcaattaaatacattttttaaatgaaaagaaaagaagaaatttaacaactgaaaaaat 38203402  T
Q  253 atctcatgttattgaagttttcattgagttt 283  Q
    || |||| ||||  ||||||  |||||||||    
T  38203401 atgtcattttataaaagtttcgattgagttt 38203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 11402833 - 11402903
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||||||| || |||||||||| ||||  || ||||||| ||||||| |  |||||||||||||||||||    
T  11402833 atagaccaagttaaaaacatggacaaaacataatcatattttgtaagaaaagtaaaagactaagattttat 11402903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 18432329 - 18432395
Alignment:
Q  20 accaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||| |||| ||||| |||| ||| |  |||||||||||| |||||||||||||||| |||||    
T  18432329 accaaattaaaaaaatggacaaaaagtaattctattatgtaagaaatataaaagactaagactttat 18432395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 26690148 - 26690190
Alignment:
Q  209 atttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||    
T  26690148 atttttgaaataaaaaataaagaagaaacttaacaagagaaaa 26690190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 26959880 - 26959922
Alignment:
Q  209 atttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||    
T  26959880 atttttgaaataaaaaataaagaagaaacttaacaagagaaaa 26959922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 2423058 - 2423123
Alignment:
Q  21 ccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||||| ||||| ||||||||| ||| | ||||||||||||| || || || |||||||||||||    
T  2423058 ccaaattaaaaacgtggataaaaagtaattatattatgtaagaaatgtagaaaactaagattttat 2423123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 349
Target Start/End: Original strand, 2423216 - 2423292
Alignment:
Q  275 attgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||||||| ||||||||||||  || |||||||| |||| |||| | ||||||||| |||||| ||||||| ||||    
T  2423216 attgagtttttatgagtatttgtctaggtgacatagatttaattaatgtttttcttatgttgcggtttggtttggtt 2423292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 2589394 - 2589478
Alignment:
Q  267 aagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |||||| |||| ||||||||||||||||   |||  ||||||| |||| |||||| ||||||||| |||||| |||| |||||||    
T  2589394 aagtttccatttagtttctatgagtattggcgtagatgacatatatttaattagtgtttttcttatgttgcggtttgattcggtt 2589478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 34111603 - 34111546
Alignment:
Q  29 aaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||| |||| |||| ||| ||||||||||||||| || |||||||| ||||||||||    
T  34111603 aaaacgtggacaaaaagtaatcatattatgtaagaaatgtaaaagacaaagattttat 34111546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 25495378 - 25495519
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag----aaaaaac 252  Q
    |||||||||| |||||| ||||| ||| | |||||||||||||||||||   ||| |||| | ||||||   |||||||| ||||||||    ||||||     
T  25495378 aaaagactaaaattttaatcattctctaagagttcaagtagcacataaatatattattgatagaaaaagcttagaagaaacttaacaagagaaaaaaaaa 25495477  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||| |||||| ||||||  || ||||||||||    
T  25495478 atgtcattttattaaagtttccattgaacttatatgagtatt 25495519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 35980071 - 35979869
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||||| ||| ||||||| ||| ||| |||||||||||||||||||||  |  ||||||||||||||| |||||||||| ||||||  ||||||||     
T  35980071 tgtaaaagattaatattttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaagcaaagaagaaacttaacaagagaaaaaat 35979972  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttg 350  Q
    || |||| ||||  |||||| |||||||||||||||||||||||  || |||||||| |||| |||||| ||||||||| |||||| ||||||| |||||    
T  35979971 atgtcat-ttataaaagtttccattgagtttctatgagtatttgtctaggtgacatagatttaattagtgtttttcttatgttgcggtttggtttggttg 35979873  T
Q  351 gtaa 354  Q
    ||||    
T  35979872 gtaa 35979869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 349
Target Start/End: Complemental strand, 35992394 - 35992197
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||||||||  |  |||||||||||||||||||||||||| ||||||  ||||||||     
T  35992394 tgtaaaagactaagattttattattctctaaaagttcaagtagcacataaataccattttgaaataaaaagtaaagaagaaacttaacaagagaaaaaat 35992295  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||| ||||  |||||| |||| ||||||| ||||||||||  || |||||||| |||| |||||| || |||||| |||||  ||||||| ||||    
T  35992294 atgtcat-ttataaaagtttccattaagtttctttgagtatttgtctaggtgacatagatttaattagtgttcttcttatgttgcagtttggtttggtt 35992197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 155 - 344
Target Start/End: Complemental strand, 36203246 - 36203052
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| || |||||||||||||| | | |||||||||||||||||||||  |||||||||||||||||| |||||||||| ||||||  |||| |||     
T  36203246 tgtaaaataccaagattttatcattctataaaagttcaagtagcacataaatacatttttgaaataaaaagcaaagaagaaacttaacaagagaacaaat 36203147  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacatttt-attagtatttttcttaagttgcgatttggtt 344  Q
    || |||| ||||  |||||| |||||||||||||| ||||||  | || |||||||| ||||| |||||| ||||| ||| |||||| |||||||    
T  36203146 atgtcattttataaaagtttccattgagtttctattagtattggtctaggtgacatagattttaattagtgtttttattatgttgcggtttggtt 36203052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 158 - 354
Target Start/End: Original strand, 25507166 - 25507365
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaa-aaaacatct 256  Q
    |||||| ||| ||||||||||  ||| |||||||||||||||||||||   ||||| ||||||||||  |||||| ||| ||||||| || |||| || |    
T  25507166 aaaagattaatattttatcatcgtctaaaagttcaagtagcacataaatatattttagaaataaaaaacaaagaaaaaacttaacaacaacaaaaaatgt 25507265  T
Q  257 catgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    ||| ||||  ||||||||||||||||||||||| |||| |  |||| |||||| |||| |||||| ||||||||| |||| | ||||||| |||||||||    
T  25507266 cattttataaaagttttcattgagtttctatgaatattggattatgagacatatatttaattagtttttttcttatgttgtggtttggtttggttggtaa 25507365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 6693866 - 6693702
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttcta 286  Q
    ||||||||||| |||||||  || |||||||| |||||  |||||||||| ||||||||| |||| || |||| ||||| ||||||||||||||||||||    
T  6693866 agttcaagtagtacataaatacaattttgaaagaaaaaacaaagaagaaacttaacaagagaaaaaatgtcattttattaaagttttcattgagtttcta 6693767  T
Q  287 tgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |||||||| ||  | |||| ||| |||| |||||| |||||||||  ||||| ||||||| ||||    
T  6693766 tgagtattggtccaagtgatatatatttaattagtgtttttcttatattgcggtttggtttggtt 6693702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 349
Target Start/End: Complemental strand, 8165337 - 8165143
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatct 256  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||  | |||||||||||||||| ||||||| || ||||| ||| | ||| || |    
T  8165337 aaaagactaagattttatcattatctaagagttcaagtagcacataaatacgtttttgaaataaaaagcaaagaaggaacttaacgagagagaaaaatgt 8165238  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||| ||||  ||  ||||||||||||| ||||||||||  | || ||||||||  ||| ||||  |||||| ||| |||||| ||||||| ||||    
T  8165237 cattttataaaaaatttcattgagtttatatgagtattgatctaggtgacatatgtttaattaacatttttattatgttgcggtttggtttggtt 8165143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 10847324 - 10847124
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaac 252  Q
    ||||||||||||||||||||||||| |   ||||||||| |||||| ||||  |||||||||||||||||| |||||||||| |||||  ||||||| ||    
T  10847324 tgtaaaagactaagattttatcatttttgaaaagttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagaaaatac 10847225  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttg 350  Q
     | |||| ||||  |||||  ||||||||| |||| ||||||||  ||| ||||||| | || | || | ||||||||| |||||| ||||||| |||||    
T  10847224 ttatcattttataaaagttcccattgagttgctattagtatttgtctatatgacatataattaagtattgtttttcttatgttgcggtttggtttggttg 10847125  T
Q  351 g 351  Q
    |    
T  10847124 g 10847124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 349
Target Start/End: Original strand, 6248374 - 6248557
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattga 267  Q
    ||||||| || ||| ||||||||| |||||||||||  ||||||||| | |||||| |||||||||| |||||||||  ||||| || |||| ||||| |    
T  6248374 ttttatctttctctaaaagttcaattagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaagaggaaaaatatgtcattttattaa 6248473  T
Q  268 agttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||| |||||| ||||||||||||||  | || |||| ||| |||| |||||| |||||||||  ||||| ||||||| ||||    
T  6248474 agtttccattgaatttctatgagtattggtctaagtgatatatatttaattagtgtttttcttatattgcggtttggtttggtt 6248557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 351
Target Start/End: Original strand, 9330687 - 9330884
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaacatc 255  Q
    |||| ||||||||||||||||| ||| ||| |||||||| | ||||    ||||||  |||||||||| |||||| ||| |||||||  ||||||| ||     
T  9330687 aaaaaactaagattttatcattctctaaaatttcaagtaactcatatgtacattttataaataaaaagcaaagaacaaacttaacaaaagaaaaaatata 9330786  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttgg 351  Q
    |||| ||||  ||||||||||||||||||||||||||||  | || ||||||||  ||| |||| | ||||||||| ||||||||||| || ||||||    
T  9330787 tcattttataaaagttttcattgagtttctatgagtattggtctaggtgacatatgtttaattaatgtttttcttatgttgcgatttgatttggttgg 9330884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 17652031 - 17652139
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaac 252  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||| |||  |||||||||||||||||  |||||||||| |||||  |||||||||     
T  17652031 tgtaaaagactaagattttattattctctaaaagttcaagtagcacaaaaatacatttttgaaataaaaaacaaagaagaaacttaacgaaagaaaaaat 17652130  T
Q  253 atctcatgt 261  Q
    || ||||||    
T  17652131 atgtcatgt 17652139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 157 - 336
Target Start/End: Original strand, 17989332 - 17989515
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatc- 255  Q
    ||||||| |||||| |||||||| | | |||||||||||||||||||||   ||||||||||||||||| |||||||||| ||| |||||||||| |       
T  17989332 taaaagattaagatgttatcattctataaaagttcaagtagcacataaatatatttttgaaataaaaagaaaagaagaaacttagcaagaaaaaaaaaaa 17989431  T
Q  256 -tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcg 336  Q
     |||| ||||  |||||| ||||||||||||||| |||||  | || |||||||| |||| ||||   ||||||||| ||||||    
T  17989432 gtcattttataaaagtttccattgagtttctatgtgtattggtctaggtgacatagatttaattaaagtttttcttatgttgcg 17989515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 3937081 - 3937220
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttcta 286  Q
    |||| ||||||| ||||||  ||||||||| | ||||||||||||||||| |||||||||||||| || |||| | ||| ||||||| ||||| ||||||    
T  3937081 agtttaagtagcgcataaatacatttttgatagaaaaagtaaagaagaaacttaacaagaaaaaa-atgtcatttaattaaagtttttattgaatttcta 3937179  T
Q  287 tgagtatttgtat--gtgacatacattttattagtattttt 325  Q
    |||||||| ||||   ||| |||||||| |||||| |||||    
T  3937180 tgagtattggtataaatgatatacatttaattagtgttttt 3937220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 9249884 - 9249791
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||| |||||||||||||| ||| || ||||| |||||| ||||||||  ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  9249884 aaaaaactaagattttatcgttaactaaaagtacaagtaacacataaatacatttttgaaataaaaaataaagaagaaacttaacaagagaaaa 9249791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 11073164 - 11073027
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaa-aaaacatct 256  Q
    ||||||||||||| |||||||| ||| ||| || ||||||||||||||  | ||||| |||||||||||||||||  |||  |||||||| |||| || |    
T  11073164 aaaagactaagatgttatcattctctaaaatttgaagtagcacataaatacgttttttaaataaaaagtaaagaaagaatcaaacaagaaaaaaaaatgt 11073065  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| ||||  ||||||| ||||||||||||| ||||||    
T  11073064 cattttataaaagtttttattgagtttctataagtatt 11073027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 40094929 - 40094785
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaa--acatctcatgttattgaagttttcattgagtttc 284  Q
    ||||||||||| ||||| |  ||||||||||| |||||| |||||||||| ||||||||| |||  | || |||| ||||| ||||||||||||||||||    
T  40094929 agttcaagtagtacatata--catttttgaaagaaaaagcaaagaagaaacttaacaagagaaataatatgtcattttattaaagttttcattgagtttc 40094832  T
Q  285 tatgagtatttgt--atgtgacatacattttattagtatttttctta 329  Q
    |||||||||| ||  | |||| ||| |||| |||||| |||||||||    
T  40094831 tatgagtattggttcaagtgatatatatttaattagtgtttttctta 40094785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 349
Target Start/End: Original strand, 44056022 - 44056217
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatc 255  Q
    |||||||| | ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||| ||||||  || |||||||||  ||||| ||     
T  44056022 aaaagacttaaattttatcattttctaaaagttcaagtagcacataaatacatttttgaaatataaagcaaagaatgaacttaacaagagaaaaaatata 44056121  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |||| ||||  ||   |||||||||||| ||||||||||  | || ||||||||  ||| || | ||||||||||| |||||  ||||||| ||||    
T  44056122 tcattttataaaaaaattcattgagtttatatgagtattggtctaagtgacatatgtttaatcaatatttttcttatgttgcagtttggtttggtt 44056217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 26344830 - 26344704
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | |||||| |||| |||| ||  ||||||||||| |||||| |||||||||| ||||||  |||||||| || |||| ||||| |    
T  26344830 ttttatcattctctaagagttcaggtagtacatgaatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaaaatatgtcattttattaa 26344731  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    |||| ||||| ||||||||||||||||    
T  26344730 agttctcatttagtttctatgagtatt 26344704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 19051410 - 19051503
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||| |||||||||| |||||| ||| ||| ||||||||||||| |||  ||||||| |||||||||| |||||||||||| ||||||| ||||    
T  19051410 aaaaaactaagatttcatcattctctgaaaattcaagtagcacagaaatacatttttaaaataaaaagaaaagaagaaattgaacaagagaaaa 19051503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 52380529 - 52380390
Alignment:
Q  158 aaaagactaaga-ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    |||||||||| | |||||| ||| ||| | ||||||| |||||||||||  ||||||||| | |||||  |||||||||| ||||||  |||||||| ||    
T  52380529 aaaagactaaaagttttatgattctctaagagttcaaatagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaatat 52380430  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| ||||| ||||||| ||||| ||||||| ||||||    
T  52380429 gtcattttattaaagtttttattgaatttctataagtatt 52380390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 12973868 - 12973994
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttattga 267  Q
    |||||||||||||| || |||||||||| |||||||  ||||||||| | |||||  |||||||||| |||||  ||| ||||| || |||| ||||| |    
T  12973868 ttttatcattatctaaatgttcaagtagtacataaatgcatttttgacagaaaaaacaaagaagaaacttaacaaaaggaaaaatatgtcattttattaa 12973967  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    ||||| ||||  | |||||||||||||    
T  12973968 agtttccattaggattctatgagtatt 12973994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 18310177 - 18310244
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattt 83  Q
    |||||||||||||||||| || | |||| ||| ||||||| ||||||| |||||||||||||||||||    
T  18310177 atagaccaaatttaaaacgtgaacaaaaagtaatcatattttgtaagaaatataaaagactaagattt 18310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 50951835 - 50951754
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaa 236  Q
    ||||||||||||   ||| |||||||| | ||| ||||||||||||||||   |||||||||||||||||| ||||||||||    
T  50951835 tgtaaaagactatattttcatcattatataaaatttcaagtagcacataattacatttttgaaataaaaagcaaagaagaaa 50951754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 25559801 - 25559682
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttattga 267  Q
    ||||||||||  || | ||||||||||| | |||||  |||||||||||||||||| |||||||||| |||||  |||| |||| || |||| ||||| |    
T  25559801 ttttatcattcgctaagagttcaagtagtagataaatacatttttgaaataaaaagcaaagaagaaacttaacaaaagataaaatatgtcattttattca 25559702  T
Q  268 agttttcattgagtttctat 287  Q
    | ||  ||||||||||||||    
T  25559701 aattcccattgagtttctat 25559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 34914432 - 34914531
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaag 269  Q
    |||||| ||| ||| | |||||||||||||||||||  ||||||| ||| |||||| ||||||||||  ||||||||||||| || |||| ||||| |||    
T  34914432 ttttattattctctaagagttcaagtagcacataaatacattttttaaagaaaaagcaaagaagaaa-ctaacaagaaaaaatatgtcattttattaaag 34914530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 15881954 - 15881895
Alignment:
Q  192 aagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||| ||||||||  ||||||| |||||||||| |||||||||| ||||||||||||||    
T  15881954 aagtaacacataaatacatttttaaaataaaaagcaaagaagaaacttaacaagaaaaaa 15881895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 27350918 - 27351001
Alignment:
Q  160 aagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca 243  Q
    |||||||| | || |||||| ||| | |||||||||||||||||||  ||||||||| | |||||||||||||| || ||||||    
T  27350918 aagactaaaagttaatcattctctaagagttcaagtagcacataaatacatttttgatagaaaaagtaaagaagtaacttaaca 27351001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 50471417 - 50471525
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatct--catgttattgaagttttcattgagtttc 284  Q
    |||||||||||||||||||  | ||||||||| |||||| ||||||| || ||||| ||| |||| || |  ||| ||||| |||||  |||||||||||    
T  50471417 agttcaagtagcacataaatacttttttgaaa-aaaaagcaaagaaggaacttaactagagaaaaaatgtgtcattttattaaagttaccattgagtttc 50471515  T
Q  285 tatgagtatt 294  Q
    ||||||||||    
T  50471516 tatgagtatt 50471525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 32937863 - 32937764
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaa---taaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||| |||||| ||||||||||| ||| || ||||||||||||||||||   | |||| |||   |||||||||||||||||| |||| |||| ||||    
T  32937863 tgtaaaggactaaaattttatcattctctaaatgttcaagtagcacataaataaaattttaaaatagtaaaaagtaaagaagaaacttaagaagagaaaa 32937764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 36782152 - 36782026
Alignment:
Q  172 ttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga----aaaaacatctcatgttattga 267  Q
    |||||||| ||| | ||||||||||  |||||||  ||||||| ||| |||||| ||| |||||| |||||||||    ||||| || | || ||||| |    
T  36782152 ttatcattctctaagagttcaagtaatacataaatacattttttaaagaaaaaggaaaaaagaaacttaacaagagagaaaaaatatgtaattttattaa 36782053  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    ||||| |||||||||||||| ||||||    
T  36782052 agtttccattgagtttctataagtatt 36782026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 41751516 - 41751601
Alignment:
Q  166 aagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||| ||||||||| ||| ||| |||||||||||  ||||  |||||||||||| ||||  |||||||||| ||||||||| ||||    
T  41751516 aagactttatcattctctaaaaattcaagtagcatgtaaatacatttttgaaattaaaaacaaagaagaaaattaacaagagaaaa 41751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 9961972 - 9961932
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaa 205  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  9961972 taagattttatcattctctaaaagttcaagtagcacataaa 9961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 23474895 - 23474758
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatc 255  Q
    |||| ||||||||||||||||| ||| |||  ||||||| ||||||||  ||||||  |||||||||  |||||||||| |||||||||  ||||| ||     
T  23474895 aaaaaactaagattttatcatt-tctaaaatctcaagtaacacataaatacatttta-aaataaaaatcaaagaagaaaattaacaagagaaaaaatatg 23474798  T
Q  256 tcatgttattgaa-gttttcattgagtttctatgagtatt 294  Q
    |||| ||||  || |||| |||||| ||||||||||||||    
T  23474797 tcattttataaaaagtttccattgaatttctatgagtatt 23474758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 344
Target Start/End: Complemental strand, 32910164 - 32909974
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacat--c 255  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||||||    ||||| |||||||||  ||||  | ||| |||||||| |||  ||       
T  32910164 aaaagactaagattttctcattctctaaaatttcaagtagcacataaatatgttttttaaataaaaatcaaagttggaatctaacaagagaaagaatgcg 32910065  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggtt 344  Q
    || | ||||  ||||||||||| ||||||||||| ||||  | || |||| ||| |||| ||||  |||||||||| |||||| |||||||    
T  32910064 tcgttttataaaagttttcattaagtttctatgattattgatctaggtgagatatatttaattaacatttttcttatgttgcggtttggtt 32909974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 52829094 - 52829190
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||| ||||||||||||||||| | | ||| || ||| || |||||||   |||||||| |||||||  |||||||||| ||||||||| ||||    
T  52829094 tgtaaaatactaagattttatcattctataaaattttaaggagtacataaatatatttttgagataaaaaacaaagaagaaacttaacaagagaaaa 52829190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 13056321 - 13056191
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga---aaaaacatctcatgt 261  Q
    |||||||  |||||| |||||||||| ||||||||||||||  ||||||  ||||||| || ||  |||||| |||||||||   ||||| || ||||      
T  13056321 taagattgcatcattttcttaaagtttaagtagcacataaatacatttt--aaataaagagcaagcaagaaacttaacaagagaaaaaaatatgtcattc 13056224  T
Q  262 tattgaagttttcattgagtttctatgagtatt 294  Q
    |||  ||||| ||| ||||||||||||||||||    
T  13056223 tataaaagttatcactgagtttctatgagtatt 13056191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 18834267 - 18834165
Alignment:
Q  244 agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttg 341  Q
    |||||||| || |||| ||||  ||||||||||||||||| ||| ||||||  | || |||||||| |||| |||||| ||||||||| |||| | ||||    
T  18834267 agaaaaaatatgtcattttataaaagttttcattgagtttttattagtattggtctaggtgacatatatttaattagtgtttttcttatgttgtggtttg 18834168  T
Q  342 gtt 344  Q
    |||    
T  18834167 gtt 18834165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 26063901 - 26063816
Alignment:
Q  261 ttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggtt 344  Q
    ||||| ||||||||||||||||||||||||||||  | || |||| ||| |||| |||| | |||||||||  ||||| |||||||    
T  26063901 ttattaaagttttcattgagtttctatgagtattgctctaggtgatatatatttaattaatgtttttcttatattgcggtttggtt 26063816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 35992440 - 35992374
Alignment:
Q  20 accaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||| ||||| |||| |||| ||| |  |||||||||||| || |||||||||||||||||||    
T  35992440 accaaattaaaaacgtggacaaaacgtaattctattatgtaagaaatgtaaaagactaagattttat 35992374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 11537101 - 11537166
Alignment:
Q  172 ttatcattatcttaaagttcaagtagcacataaagtcatttttgaaat-aaaaagtaaagaagaaa 236  Q
    |||||||| | | |||||||||||||||  ||||  |||||||||||| |||||||||||||||||    
T  11537101 ttatcattttttaaaagttcaagtagcatgtaaatacatttttgaaataaaaaagtaaagaagaaa 11537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 35375455 - 35375594
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaa---tttaacaagaaaaaacat 254  Q
    ||||| |||| |||||| ||||  || ||||||||||||||| || ||  || ||||||| |||| || ||| ||||||   ||||| | ||||||| ||    
T  35375455 aaaagtctaatattttaacattcactaaaagttcaagtagcatatgaatacacttttgaattaaagagcaaataagaaactttttaataggaaaaaatat 35375554  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| ||||  |||||| |||||||||||||| ||||||    
T  35375555 gtcattttataaaagtttccattgagtttctataagtatt 35375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 25865808 - 25865752
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcattttt 214  Q
    |||||||||| ||||||||||| ||| | | |||||||||||||||||  |||||||    
T  25865808 aaaagactaaaattttatcattctctaacatttcaagtagcacataaatacattttt 25865752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 157 - 317
Target Start/End: Complemental strand, 892138 - 891974
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||| |||||||| ||||||  |||||||||||    
T  892138 taaaagattaagattttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtagagaagaaacttaacaagagaaaaaacat 892039  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatttgtat--gtgacatacattttatta 317  Q
     |||| ||||  |||||| |||||||||||||| |||||| ||||  |||||||| |||| ||||    
T  892038 gtcattttataaaagtttccattgagtttctataagtattggtataggtgacatagatttaatta 891974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 155 - 349
Target Start/End: Complemental strand, 19134901 - 19134703
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaata-aaaagtaaagaagaaatttaaca--agaaaaaa 251  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||||||||  ||||||||||||| ||||  |||||||||| ||||||  ||||||||    
T  19134901 tgtaaaagactaagattttattattctctaaaagttcaagtagcacataaatacatttttgaaataaaaaaacaaagaagaaacttaacaagagaaaaaa 19134802  T
Q  252 catctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
     || |||| ||||  |||||| |||| ||||||||||||||||  | || |||||||| |||| |||||| ||||||||| |||||| ||||||| ||||    
T  19134801 tatgtcat-ttataaaagtttccattaagtttctatgagtatttatctaggtgacatagatttaattagtgtttttcttatgttgcggtttggtttggtt 19134703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 32190474 - 32190339
Alignment:
Q  161 agactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctca 258  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||||||||||| |||||||||| ||||||  |||||||| || |||    
T  32190474 agactaagattttatcattctctaaaagttcaagtagcgcataaatacatttttgaaataaaaagaaaagaagaaacttaacaagagaaaaaatatgtca 32190375  T
Q  259 tgttattgaagttttcattgagtttctatgagtatt 294  Q
    | ||||  |||||| |||||||||||||||| ||||    
T  32190374 ttttataaaagtttccattgagtttctatgaatatt 32190339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 349
Target Start/End: Original strand, 14564710 - 14564905
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaa-caagaaaaaaca 253  Q
    |||||||||||||||||| |||||| | | ||||||||| |||||||||||  |||||||||||||||||| |||||||||| ||||  ||||||| |||    
T  14564710 tgtaaaagactaagatttcatcattctttaaaagttcaaatagcacataaatacatttttgaaataaaaagcaaagaagaaacttaataaagaaaataca 14564809  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatttgt-atgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |  ||| || |  ||||||||||||||||| ||||||| || ||  ||  ||||| |||| |||||| ||||||||| ||||| |||||||| ||||    
T  14564810 ttgcattttttaaaagttttcattgagtttttatgagt-ttggtcttgatacatatatttaattagtgtttttcttatgttgcaatttggtttggtt 14564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 29048864 - 29048972
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgttattgaagttttcattgagtttct 285  Q
    |||||||||||||||||||  ||||||||||| |||||| |||||||||| |||||| || ||||| || |||| ||||| ||||||||||||||||| |    
T  29048864 agttcaagtagcacataaatacatttttgaaacaaaaagcaaagaagaaacttaacatgagaaaaaaatgtcattttattaaagttttcattgagttttt 29048963  T
Q  286 atgagtatt 294  Q
    |||||||||    
T  29048964 atgagtatt 29048972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 350
Target Start/End: Complemental strand, 12108375 - 12108178
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtca-tttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaaca 253  Q
    ||||| ||||||||||||||||| ||| ||||||||||| ||| |||||  || ||||||| |||||||  |||||||||| ||||||  |||||||| |    
T  12108375 taaaatactaagattttatcattctctaaaagttcaagtggcatataaatacattttttgacataaaaatcaaagaagaaacttaacaagagaaaaaata 12108276  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttg 350  Q
    | |||| ||| | || |||||||||||||||||||||||||  | || || ||||| |||| ||| || ||||| ||| |||||| ||||||| |||||    
T  12108275 tgtcatttta-taaaattttcattgagtttctatgagtattggtctaggttacataaatttaatttgtgtttttattatgttgcggtttggtttggttg 12108178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 30752856 - 30753058
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaaca 253  Q
    ||||||||||| ||||||||||||| ||| ||| || ||||| ||||||||  ||||||||||||| |||  |||||||||| |||| |||| ||||  |    
T  30752856 tgtaaaagactgagattttatcattctctaaaattttaagtatcacataaatacatttttgaaatagaaaacaaagaagaaacttaataagagaaaagta 30752955  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttgg 351  Q
    | | ||  |||  |||||| ||||  |||||||||||||||  | ||||||| ||| ||||  ||| | ||||||||| |||||| ||||||||||||||    
T  30752956 tgttattgtataaaagtttccattatgtttctatgagtattggtttatgtgatatagatttagttaatgtttttcttatgttgcggtttggttcggttgg 30753055  T
Q  352 taa 354  Q
    |||    
T  30753056 taa 30753058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 28633231 - 28633325
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||||||||||||||||| ||| |||||| ||||| ||||||||  ||||||||||||| |||| ||| |||||| ||||||||| ||||    
T  28633231 taaaagactaagattttatcattttctaaaagtttaagtaacacataaatacatttttgaaatagaaagcaaaaaagaaacttaacaagagaaaa 28633325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 294
Target Start/End: Original strand, 9686336 - 9686475
Alignment:
Q  159 aaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaata-aaaagtaaagaagaaatttaacaaga--aaaaacat 254  Q
    ||||||||| |||||| ||||| ||| | |||||||||||||||||||  |||||||   ||| ||||| |||||||||| |||||||||  ||||| ||    
T  9686336 aaagactaaaattttaatcattctctaagagttcaagtagcacataaatacattttttttatagaaaagcaaagaagaaacttaacaagagaaaaaatat 9686435  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     | || ||||| ||||||||||||| ||||||||||||||    
T  9686436 tttattttattaaagttttcattgaatttctatgagtatt 9686475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 13092298 - 13092423
Alignment:
Q  171 tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaa 268  Q
    ||||||||| ||| | |||| |||||| ||| |||  ||||||||||| |||||||||||| |||| ||||||  |||||||  || |||| ||||| |     
T  13092298 tttatcattctctaagagtttaagtagtacaaaaatacatttttgaaagaaaaagtaaagaggaaacttaacaagagaaaaattatgtcattttattaac 13092397  T
Q  269 gttttcattgagtttctatgagtatt 294  Q
     |||||||||||||||||||||||||    
T  13092398 attttcattgagtttctatgagtatt 13092423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 22414109 - 22414236
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaacatctcatgttattg 266  Q
    |||||||||| ||| |||||||||||||||||||||   |||||||| | | |||| |||||||||| ||||||||   |||||| || |||| |||||     
T  22414109 ttttatcattctctaaaagttcaagtagcacataaatagatttttgatagataaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttatta 22414208  T
Q  267 aagttttcattgagtttctatgagtatt 294  Q
    |||||| |||||| ||| | ||||||||    
T  22414209 aagtttccattgaatttatgtgagtatt 22414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 354
Target Start/End: Complemental strand, 7169847 - 7169675
Alignment:
Q  189 ttcaagtagcacataaagtcatttttgaaata--aaaagtaaagaagaaatttaacaagaaaaaac---atctcatgttattgaagttttcattgagttt 283  Q
    |||||||||||||||||  |||||||   |||  ||||| |||||||||| ||||| ||| ||||    || |||| ||||| ||||||||||||| |||    
T  7169847 ttcaagtagcacataaatacattttttttatagaaaaagcaaagaagaaacttaacgagagaaaaatatatgtcattttattaaagttttcattgaattt 7169748  T
Q  284 ctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    |||||||||||  | ||| ||| ||| |||| |||||| |||||||||  ||||  |||||||||||||||||    
T  7169747 ctatgagtattggtctatatgatatatatttaattagtgtttttcttatattgcagtttggttcggttggtaa 7169675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 4577429 - 4577518
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||||||||||||||||||||||||| ||||||||   ||| || || || | ||||  ||||||||||||| ||||||||||||||    
T  4577429 catttttgaaataaaaagtaaagaagaaaattaacaagagaaaataatatgtcgttttataaaagttttcattgaatttctatgagtatt 4577518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 294
Target Start/End: Complemental strand, 24644733 - 24644611
Alignment:
Q  174 atcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattgaagtt 271  Q
    |||||| ||| | ||| ||||||| |||||||  ||||||||||| | |||| |||||||||| | ||| |||  ||||| || |||| ||||| |||||    
T  24644733 atcattctctaagagtgcaagtagtacataaatacatttttgaaagataaagcaaagaagaaactcaacgagagtaaaaatatgtcattttattaaagtt 24644634  T
Q  272 ttcattgagtttctatgagtatt 294  Q
    ||||||||| |||||||||||||    
T  24644633 ttcattgaggttctatgagtatt 24644611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 349
Target Start/End: Complemental strand, 13532069 - 13531871
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatt----taacaag-aaaaaac 252  Q
    |||||| ||||||||||||||| | | ||| |||||||||||||||||    ||||| |||||||||  ||||||| ||||    ||||||| ||||||     
T  13532069 aaaagattaagattttatcattctataaaatttcaagtagcacataaatatgttttttaaataaaaaacaaagaaggaattaatctaacaagaaaaaaaa 13531970  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |  |||| ||||  |||||| |||||| ||||||||||||||  | || |||| |||  ||| ||||  |||||||||| |||||| ||||||| ||||    
T  13531969 aagtcattttataaaagtttccattgaatttctatgagtattggtctaggtgagatatgtttaattaacatttttcttatgttgcggtttggtttggtt 13531871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 8064827 - 8064914
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||||||||||||  |||||| ||| |||||||  ||||| | || |||| ||||  ||||||||||||||||||||||||||||    
T  8064827 catttttgaaataaaaatcaaagaaaaaacttaacaaaagaaaatatatgtcat-ttataaaagttttcattgagtttctatgagtatt 8064914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 13859068 - 13858991
Alignment:
Q  279 agtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    |||||||||||||| |||  |||||||||||  ||  ||||| ||||||||||  ||||| |||||||||||||||||    
T  13859068 agtttctatgagtacttgattatgtgacataggttgaattagcatttttcttatcttgcggtttggttcggttggtaa 13858991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 16971480 - 16971411
Alignment:
Q  227 aaagaagaaatttaacaa--gaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||||| |||||||  ||||||| || |||| ||||| |||||| ||||| |||||||||||||||    
T  16971480 aaagaagaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattgtgtttctatgagtatt 16971411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 349
Target Start/End: Complemental strand, 32223109 - 32222912
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacat 254  Q
    ||||||| ||| | ||||||||||| ||| ||||||||||||||||| |||  || |||||||||||||||||||||||||| |||||||||||||| ||    
T  32223109 tgtaaaatacttatattttatcattctctaaaagttcaagtagcacacaaatacacttttgaaataaaaagtaaagaagaaacttaacaagaaaaaatat 32223010  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatttgtat--gtgacatacatttt-attagtatttttcttaagttgcgatttggttcggtt 349  Q
     |||| ||||  |||||| |||||||||| ||||| |||| ||||  |||||||| ||||| |||||| ||||| ||| |||||| ||||||| ||||    
T  32223009 gtcattttataaaagtttacattgagtttatatgaatattggtataggtgacatatattttaattagtgtttttattatgttgcggtttggtttggtt 32222912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 35233093 - 35232894
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaa--aaaac 252  Q
    ||||||||| ||||||||||||||||| | | | ||||| |||||| ||||   ||||||||||||||||||||| || ||||||||||||||  ||||     
T  35233093 tgtaaaagattaagattttatcattatatgacaattcaattagcacgtaaataaatttttgaaataaaaagtaaataataaatttaacaagaaaaaaaaa 35232994  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttg 350  Q
    || |||| |||| ||||||||||||||||||||||| |||||||  || ||||||||  ||| |||||| ||||||||| |||||| ||| |||||||||    
T  35232993 atgtcattttatagaagttttcattgagtttctatgtgtatttgtctaggtgacataagtttaattagtgtttttcttatgttgcggtttagttcggttg 35232894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 4688969 - 4689170
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||| ||| |||||||||||||   |||||||||||||||| ||||  ||||||||| || ||||  |||||||||| ||||||  |||||||| ||     
T  4688969 aaaagattaaaattttatcattattaaaaagttcaagtagcacctaaatacatttttgagatgaaaaacaaagaagaaaattaacaagagaaaaaatata 4689068  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggta 353  Q
    |||| |||| |||||||||||||||||| ||||||||||||  || ||||||||  ||| |||| | ||||||||| |||||  |||| |||||||||||    
T  4689069 tcattttatagaagttttcattgagtttttatgagtatttgtctaggtgacataagtttaattattgtttttcttatgttgcagtttgtttcggttggta 4689168  T
Q  354 at 355  Q
    ||    
T  4689169 at 4689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 155 - 354
Target Start/End: Original strand, 49641118 - 49641322
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga---aaaaa 251  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||  |||||||||| | ||||| ||| |||||| |||||||||   ||| |    
T  49641118 tgtaaaagactaagattttatcattatctaaaagttcaagtaacacataaatacatttttgaagtgaaaagcaaaaaagaaacttaacaagagataaata 49641217  T
Q  252 catctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    | | |||| ||||  || ||| ||| |||||||||||||||||  | || |||||||| |||| ||| |||||||||||| || | | ||||||| ||||    
T  49641218 cgtgtcattttataaaaatttccatggagtttctatgagtattagtctaggtgacataaatttaattggtatttttcttatgtcgtggtttggtttggtt 49641317  T
Q  350 ggtaa 354  Q
    |||||    
T  49641318 ggtaa 49641322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 48338629 - 48338770
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| ||||| ||||||||||| | | |||||||||||| ||||||||  |||||||||||||||||| |||||||||| ||||||  ||||||||     
T  48338629 tgtaaaatactaatattttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaat 48338728  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||  |||||| |||||||||||||||||||||    
T  48338729 atgtcattttataaaagtttccattgagtttctatgagtatt 48338770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 48602304 - 48602221
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaa 241  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  48602304 aaaaaactaagattttatcattatctaaaagttcaagtagcacataaacatatttttgaaataaaaagtaaagaagaaacttaa 48602221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 18536457 - 18536316
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| ||| |||| |||||||| ||| |||||||||||||||||||||  ||||||||||||||||||  ||||||||| ||||||  ||||||||     
T  18536457 tgtaaaatacttagatgttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagcgaagaagaaacttaacaagagaaaaaat 18536358  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||  |||||| |||| ||||| ||||||||||    
T  18536357 atgtcattttataaaagtttccatttagtttatatgagtatt 18536316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 36106260 - 36106179
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||    
T  36106260 actaatattttatcattctcttaaagttcaaggagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaa 36106179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 21069357 - 21069522
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac--atctcatgttatt 265  Q
    |||||||||| ||| | ||||||||||| |||||||  ||||||||||| |||||| |||||||||| ||||||  |||||||||  || |||| |||||    
T  21069357 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaacaaaaagcaaagaagaaacttaacaagagaaaaaacatatgtcattttatt 21069456  T
Q  266 gaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttctta 329  Q
     ||||||||||| ||||| || |||||||  |||| |||||||| |||| |||||| |||||||||    
T  21069457 aaagttttcattaagtttatacgagtattggtgtaagtgacatatatttaattagtgtttttctta 21069522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 46471714 - 46471853
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||||| ||||||||||||||| ||| |||||| ||||| ||||||||  ||||||||||||||||||||||||| ||| ||||||  |||||||| ||    
T  46471714 taaaagattaagattttatcattctctaaaagttgaagtatcacataaatacatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatat 46471813  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| ||||  || ||| |||||||||| ||| ||||||    
T  46471814 gtcattttataaaaatttccattgagtttttataagtatt 46471853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 14867062 - 14867193
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgtt 262  Q
    |||||||||||||||  || |||| ||||||| ||||||||   ||||| |||||||||||||||||||||| ||||||  ||||| || || |||| ||    
T  14867062 taagattttatcattccctaaaagatcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaataatatgtcatttt 14867161  T
Q  263 attgaagttttcattgagtttctatgagtatt 294  Q
    || |||||||| ||| ||||||||||||||||    
T  14867162 atagaagttttgattaagtttctatgagtatt 14867193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 48685036 - 48685178
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaa 251  Q
    ||||||||| |||||||||| |||| ||| |  ||||||||||||||||||    |||||||||||||||  |||||| ||||||||||||   ||||||    
T  48685036 tgtaaaagattaagattttaccattctctaacggttcaagtagcacataaaaatgtttttgaaataaaaaacaaagaataaatttaacaagagaaaaaaa 48685135  T
Q  252 catctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     || |||| ||||  ||||| || |||||||||||||||||||    
T  48685136 tatgtcattttataaaagttatcgttgagtttctatgagtatt 48685178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 3666863 - 3666663
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||| ||||||||||||||||| | | ||||||||||||  |||||||  |||||  | ||||||||| | |||| ||| ||||||  |||||||| ||     
T  3666863 aaaacactaagattttatcattctttaaaagttcaagtaatacataaatacatttcagcaataaaaagcatagaaaaaacttaacaagagaaaaaatata 3666764  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggta 353  Q
    |||| ||||  ||||||||||||||||||||||| ||||  | || || |||||  ||| |||| | ||||||||| |||||| || |||| ||||||||    
T  3666763 tcattttataaaagttttcattgagtttctatgaatattagtctaagttacatatgtttaattattgtttttcttatgttgcggttcggtttggttggta 3666664  T
Q  354 a 354  Q
    |    
T  3666663 a 3666663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 5122175 - 5122082
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||  | ||||| |||||||||| ||||||  || ||||||||| ||||    
T  5122175 aaaagactaaggttttatcattatataaaagttcaagtagcacataaatacgttttttaaataaaaagcaaagaaagaacttaacaagagaaaa 5122082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 170 - 349
Target Start/End: Original strand, 41325696 - 41325879
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | ||||||||||| |||||||  ||||||||||| |||||  |||||||||| |||||  ||||||||| || |||| ||||| |    
T  41325696 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaaacaaagaagaaacttaacaaaagaaaaaatatgtcattttattaa 41325795  T
Q  268 agttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||| |||||||||| |  ||||||| ||  | |||| ||| || | |||||| |||||||||  ||||| ||||||| ||||    
T  41325796 agtttccattgagtttattcgagtattggtcaaagtgatatatatctaattagtgtttttcttatattgcggtttggtttggtt 41325879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 53934936 - 53935028
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||| |||||||||||||| |||| ||||||||||||| |||||||  |||||||| ||||||||| ||| ||||||||| |||||| ||||    
T  53934936 aaaagattaagattttatcatcatctaaaagttcaagtagtacataaatacatttttg-aataaaaagaaaataagaaatttgacaagagaaaa 53935028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 48293224 - 48293131
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||||||||  |||||||||   |||||| |||||||||| |||| |||| ||||    
T  48293224 tgtaaaagattaagattttattattttctaaaagttcaagtagcacataaatacatttttga---aaaaagcaaagaagaaacttaataagagaaaa 48293131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 29233050 - 29233176
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | |||| ||| |  |||||||  |||||  |||| |||||  |||||||||| |||||||  ||||||| || |||| ||||| |    
T  29233050 ttttatcattctctaagagtttaagcactacataaatacatttaggaaagaaaaatcaaagaagaaacttaacaaaggaaaaaatatgtcattttattaa 29233149  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    |||||||||||||||||||||||||||    
T  29233150 agttttcattgagtttctatgagtatt 29233176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 45226668 - 45226739
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaa 236  Q
    ||||||||||||||| ||| || |||||| |||||| ||||  |||||||||||||||||| ||||||||||    
T  45226668 taagattttatcattctctaaaggttcaaatagcacgtaaatacatttttgaaataaaaagcaaagaagaaa 45226739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 27743488 - 27743582
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||| ||| |||||| ||||| ||| | ||||||||||| |||||||  ||||||||||| |||||| |||||||||| ||||||||| ||||    
T  27743488 aaaagattaaaattttaatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaagcaaagaagaaacttaacaagagaaaa 27743582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 6102176 - 6102313
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatct 256  Q
    |||| |||||||||||| |||| | | ||||||| ||||||| |||||  | ||||| | ||||||||  ||||||||| |||||| || ||||| || |    
T  6102176 aaaaaactaagattttaacattctttaaaagttccagtagcaaataaatacttttttaatataaaaagcgaagaagaaacttaacacgagaaaaaaatgt 6102275  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| ||||  ||||||||||||| ||| ||||||||||    
T  6102276 cattttataaaagttttcattgaatttttatgagtatt 6102313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 8484961 - 8485105
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag------aaaaa 250  Q
    |||||||||| |||||| ||||| ||| | ||||||||||||| |||||  |||| |||| | |||||| |||||||||| ||||||||      |||||    
T  8484961 aaaagactaaaattttaatcattctctaagagttcaagtagcatataaatacattattgatagaaaaagcaaagaagaaacttaacaagagaaaaaaaaa 8485060  T
Q  251 ac-atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || || |||| ||||| |||||| |||||| ||||||||||||||    
T  8485061 acaatgtcattttattaaagtttacattgaatttctatgagtatt 8485105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 35014563 - 35014656
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||| ||||| ||||||||||| |||  ||||| ||||||||||||||  ||||||| |||||||||  || ||||||| ||||||||| ||||    
T  35014563 aaaaaactaaaattttatcattctctagaagtttaagtagcacataaatacattttttaaataaaaaacaatgaagaaacttaacaagagaaaa 35014656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 45464500 - 45464582
Alignment:
Q  210 tttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||| | |||||| | |||||||| ||||||||||||||  | |||| ||||| ||||||||||||| ||||||||||||||    
T  45464500 tttttgatagaaaaagcacagaagaaacttaacaagaaaaaa--tgtcattttattaaagttttcattgaatttctatgagtatt 45464582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7784389 - 7784321
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttt 84  Q
    |||||||||||| |||||||||| |||| ||| ||||||| ||||||| || ||| |||||||||||||    
T  7784389 atagaccaaattaaaaacatggacaaaaagtaatcatattttgtaagaaatgtaatagactaagatttt 7784321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 18399340 - 18399443
Alignment:
Q  186 aagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag--aaaaaacatctcatgttattgaagttttcattgagttt 283  Q
    |||||||||||| |||||||  ||||||||| |||||||  |||||||||| ||||||||  |||||| || |||| | ||  |||||| ||||||||||    
T  18399340 aagttcaagtagaacataaatacatttttgagataaaaatcaaagaagaaacttaacaagtcaaaaaatatgtcatttcataaaagtttccattgagttt 18399439  T
Q  284 ctat 287  Q
    ||||    
T  18399440 ctat 18399443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 41312413 - 41312330
Alignment:
Q  211 ttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagta 292  Q
    ||||||||||||||| |||||||||||||||||  |||||||| || ||||  |||  ||||||  ||||||||||||||||||    
T  41312413 ttttgaaataaaaagcaaagaagaaatttaacaatagaaaaaatatgtcattctataaaagtttctattgagtttctatgagta 41312330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 25686257 - 25686171
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac 242  Q
    ||||||||||||| ||||||||||| | | |||||||||||||||| ||||  ||||||| ||||||||||  || |||||| |||||    
T  25686257 tgtaaaagactaaaattttatcattctttaaaagttcaagtagcac-taaatacatttttaaaataaaaagcgaaaaagaaacttaac 25686171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 41260424 - 41260490
Alignment:
Q  185 aaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||| ||||||   ||||||||||||||||| |||||||||| || |||||| ||||    
T  41260424 aaagttcaagtagcccataaacagatttttgaaataaaaagcaaagaagaaactttacaagagaaaa 41260490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 7783969 - 7783890
Alignment:
Q  171 tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||| ||| |||  || ||||| |||||||  ||||||||||||||||||||||||| ||| ||||||||| ||||    
T  7783969 tttatcattctctaaaaaatctagtagaacataaatacatttttgaaataaaaagtaaagaa-aaacttaacaagagaaaa 7783890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 7763840 - 7763762
Alignment:
Q  211 ttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctat 287  Q
    |||||||||||||||||||||  ||| | ||||  |||||||| || |||| ||||  |||||||||||||||||||||    
T  7763840 ttttgaaataaaaagtaaagataaaactaaacacgagaaaaaaaatgtcattttataaaagttttcattgagtttctat 7763762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 42199079 - 42199126
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaa 205  Q
    |||||||||| ||||||| ||| ||| |||||||||||||||||||||    
T  42199079 aaaagactaaaattttattattctctaaaagttcaagtagcacataaa 42199126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 4642766 - 4642828
Alignment:
Q  189 ttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||| ||||||||||||  ||||||||| | |||||| |||||||||| ||||||||| ||||    
T  4642766 ttcatgtagcacataaatacatttttgatagaaaaagcaaagaagaaacttaacaagagaaaa 4642828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 23625664 - 23625563
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttattgaagttttcattgagtttc 284  Q
    ||||||||||||| |||||  ||||||| | | |||||| |||| ||||| |||||  ||||||||  || |||| ||||| ||||||||||||| ||||    
T  23625664 agttcaagtagcagataaatacattttttatagaaaaaggaaagtagaaacttaacaaaagaaaaataatatcattttattaaagttttcattgaatttc 23625565  T
Q  285 ta 286  Q
    ||    
T  23625564 ta 23625563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 28148053 - 28148139
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca 243  Q
    |||||||||| |||||| | ||| ||| | ||| |||||||||||||||  ||||||||| | |||||| |||||||||| ||||||    
T  28148053 aaaagactaaaattttaataattctctgagagtgcaagtagcacataaatacatttttgatagaaaaagcaaagaagaaacttaaca 28148139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 35233142 - 35233073
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||||||| ||||| |||| |||||||| |  |||||||||||| || ||||||| |||||||||||    
T  35233142 atagaccaaatt-aaaacgtggacaaaaggtaattttattatgtaagaaatgtaaaagattaagattttat 35233073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 1564825 - 1564718
Alignment:
Q  192 aagtagcacataaagtcatttttgaaataaaaagtaaagaagaaat-----ttaacaaga-aaaaacatctcatgttattgaagttttcattgagtttct 285  Q
    ||||||||||||||  ||||||||| |||||||  |||||||||||     ||||||||| ||||| || |||| ||||| |||||||| |||| ||| |    
T  1564825 aagtagcacataaatacatttttgatataaaaaacaaagaagaaattaaacttaacaagagaaaaaaatgtcattttattaaagttttc-ttgaatttat 1564727  T
Q  286 atgagtatt 294  Q
    |||||||||    
T  1564726 atgagtatt 1564718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 15724128 - 15724200
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttataa 88  Q
    ||||||||| || |||||||||| |||| ||| || |||| | ||||| ||  ||||||||||||||||||||    
T  15724128 atagaccaagttaaaaacatggacaaaatgtaatcctattttttaagaaatgcaaaagactaagattttataa 15724200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 6277 - 6445
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgtt 262  Q
    ||||||||||||||| ||| |||||||||||| ||||||||   ||||| |||||||||||||||||||||| ||||||  |||||||| || |||||||    
T  6277 taagattttatcattctctaaaagttcaagtaacacataaaaatattttagaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcatgtt 6376  T
Q  263 attgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttctta 329  Q
    || |||||||||||| ||||||||||||||||  | || ||||||||  ||| |||||| |||||||||    
T  6377 atagaagttttcattaagtttctatgagtattggtttaggtgacatatgtttaattagtgtttttctta 6445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 349
Target Start/End: Original strand, 1331279 - 1331475
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag--aaaaaac 252  Q
    ||||||||||||||||||||| ||| | | |||||||||||||||||||||   |||||||||||||||||||||||| ||| ||||||||  |||||      
T  1331279 tgtaaaagactaagattttattattctttaaaagttcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagcaaaaaagt 1331378  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||| ||||  |||||| ||||||| |||||||||||||||  ||||| ||||| |||| |||||| ||||||||| |||||| ||||||| ||||    
T  1331379 atgtcat-ttataaaagtttccattgag-ttctatgagtatttgtctatgtaacatagatttaattagtgtttttcttatgttgcggtttggtttggtt 1331475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 13194190 - 13194331
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca----agaaaaaac 252  Q
    ||||||| ||||||||||||||| ||| |||||| || |||||||||||   ||||||||||||||||| |||||||||| ||||||    ||||||||     
T  13194190 taaaagattaagattttatcattctctaaaagtttaattagcacataaatatatttttgaaataaaaagcaaagaagaaacttaacaagagagaaaaaat 13194289  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||  |||||| |||||| ||||||||||||||    
T  13194290 atgtcattttataaaagtttccattgattttctatgagtatt 13194331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 22014248 - 22014386
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatc 255  Q
    ||||||||||||||||||| ||| | | |||||| ||||||||||||||   ||||||||  ||||||| |||||||||| ||||||||| ||||| ||     
T  22014248 taaaagactaagattttattattctttaaaagtttaagtagcacataaatatatttttgacttaaaaagcaaagaagaaacttaacaagagaaaaatatg 22014347  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||  |||||| ||||||| |||||||||||||    
T  22014348 tcattttataaaagtttccattgagattctatgagtatt 22014386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 41166442 - 41166638
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||| ||||||||||||| ||| ||| ||||||||||||||| |||||   |||||||| |||||||| |||||||||| ||||||  |||||||||||    
T  41166442 taaaatactaagattttattattctctaaaagttcaagtagcatataaatatatttttgacataaaaagcaaagaagaaacttaacaagagaaaaaacat 41166541  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
     |||| ||||  ||   |||||||||||||||||| ||||  | || |||||||| |||| ||||||  |||| ||| |||| | ||||||| ||||    
T  41166542 gtcattttataaaaaaattcattgagtttctatgaatattggtctaggtgacataaatttaattagtgcttttattatgttgtggtttggtttggtt 41166638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 5862440 - 5862318
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaacatctcatgttattg 266  Q
    |||||||||| ||| | |||||||||||||||||||  ||||||||||| |||||| |||||||||| || |||||   |||||| || |||| |||||     
T  5862440 ttttatcattctctaatagttcaagtagcacataaatacatttttgaaagaaaaagcaaagaagaaactttacaagagaaaaaaatatgtcattttatta 5862341  T
Q  267 aagttttcattgagtttctatga 289  Q
    |||||||||||||||| ||||||    
T  5862340 aagttttcattgagttcctatga 5862318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 12041389 - 12041185
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaa---tttaacaagaaaaaa 251  Q
    ||||||| ||||| ||||||||||| ||| || ||||||| ||||||| ||  |||||||||||||||||||||||||||||   | ||| |  ||||||    
T  12041389 tgtaaaatactaatattttatcattctctaaaggttcaaggagcacatgaatacatttttgaaataaaaagtaaagaagaaactttataatagaaaaaaa 12041290  T
Q  252 catctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
      | || | ||||  |||||||||||||||||||||||||| |  | ||  ||||||| |||| ||||   ||||||||| |||||| ||||||| ||||    
T  12041289 tttgtcgttttataaaagttttcattgagtttctatgagtaatggtctagatgacatagatttaattaaagtttttcttatgttgcggtttggtttggtt 12041190  T
Q  350 ggtaa 354  Q
    |||||    
T  12041189 ggtaa 12041185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 354
Target Start/End: Complemental strand, 27301285 - 27301086
Alignment:
Q  159 aaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatct 256  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||    |||||||||||||||||| |||||||||  ||||||  ||| |||| || |    
T  27301285 aaagactaagattttaacattctctaaaagttcaagtagcacatagctacatttttgaaataaaaagcaaagaagaagcttaacaagagagaaaatatgt 27301186  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
     || || |   ||||| ||| |||||||||||||||||  | || |||||||  |||| |||| ||||||||||| |||||  ||||||| |||| ||||    
T  27301185 aattttttaatagtttccatggagtttctatgagtattgatctaggtgacatgaatttaattaatatttttcttatgttgctgtttggtttggtttgtaa 27301086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 15320385 - 15320184
Alignment:
Q  158 aaaagactaagattttatcattatcttaaa-gttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||||||||||||||| ||||  || ||| |||||||||||| |||||  || ||||||||||||| | |||||||||| ||| ||  |||||||| ||    
T  15320385 aaaagactaagattttaacattcactaaaaagttcaagtagcatataaatacacttttgaaataaaatgcaaagaagaaacttatcaagagaaaaaatat 15320286  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtat--ttgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggt 352  Q
      ||| ||||  ||||||||||||||||||||| |||||   | || ||||||||  ||| |||| | ||||||||| |||||| |||||||| | ||||    
T  15320285 gccattttataaaagttttcattgagtttctataagtatgggtctaggtgacatatgtttaattaatgtttttcttatgttgcggtttggttcagatggt 15320186  T
Q  353 aa 354  Q
    ||    
T  15320185 aa 15320184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 36500423 - 36500284
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaattta-acaagaaaaaaca 253  Q
    ||||||| || |||||||||||||| |||  |||||||||||| |||||||  || ||||||||||||||| |||||||||| ||| |  |||| ||| |    
T  36500423 tgtaaaataccaagattttatcattctctgtaagttcaagtagaacataaataca-ttttgaaataaaaagcaaagaagaaacttacaagagaacaaata 36500325  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |  ||| ||||  ||||||||||||||||||||| ||||||    
T  36500324 tgccattttataaaagttttcattgagtttctattagtatt 36500284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 30514735 - 30514644
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||| ||||||||||||||| ||| |||||||||||| ||||||||  || ||||||||||||||| |||||||||| | ||||||| ||||    
T  30514735 aaaagattaagattttatcattctctaaaagttcaagta-cacataaataca-ttttgaaataaaaagaaaagaagaaaataaacaagataaaa 30514644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 349
Target Start/End: Original strand, 44085776 - 44085973
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtca--tttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaaca 253  Q
    |||||||| ||||||||||||| ||| ||| |||||||||||||||||  ||  ||||| |||||||||||||||||  ||| ||||  ||||||||| |    
T  44085776 aaaagactgagattttatcattctctaaaatttcaagtagcacataaatacattttttttaaataaaaagtaaagaaagaatctaacaaaagaaaaaata 44085875  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    | |||| ||||  ||||||  ||||| |||| | |||||||  | || |||| |||  ||| ||||  |||||||||| |||||| ||||||| ||||    
T  44085876 tgtcattttataaaagtttcaattgaatttccacgagtattggtctaggtgagatatttttaattaacatttttcttatgttgcggtttggtttggtt 44085973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 20496736 - 20496814
Alignment:
Q  217 aataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||| ||||||||||||||||||||| |||||||| |||| ||||   ||||| | |||||||||||||||||||    
T  20496736 aataaaaaataaagaagaaatttaacaagagaaaaacatgtcattttataatagtttccgttgagtttctatgagtatt 20496814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 36964272 - 36964368
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataa--agtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||||||||||||||||| ||  ||||||||| | ||||||||  |  |||| ||||||||||||| ||||||| || ||||||||| ||||    
T  36964272 taaaagactaagattttatcattctcaaaaagttcaacttgcacataagtatacattgttgaaataaaaagaaaagaagcaacttaacaagagaaaa 36964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 11377454 - 11377398
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcattttt 214  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||||  |||||||    
T  11377454 aaaagactaagattttatcattctctaaaagttcaaatagcacataaatacattttt 11377398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 22014196 - 22014266
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||| |||||| |||||||| | |||| ||| | ||||||||||||| || |||||||||||||||||||    
T  22014196 atagatcaaattaaaaacatgaacaaaaagtaattatattatgtaagaaatttaaaagactaagattttat 22014266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 325
Target Start/End: Complemental strand, 11051191 - 11051029
Alignment:
Q  169 attttatcattatcttaaagttcaagtagcacataaagtca-tttttgaaat-aaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttat 264  Q
    ||||||||||| ||| ||||||||||||||| |||||  || |||||||||| |||||  |||||||||| |||||   ||||||||||| |||| | ||    
T  11051191 attttatcattctctaaaagttcaagtagcatataaatacattttttgaaataaaaaaacaaagaagaaacttaacgagagaaaaaacatgtcatttcat 11051092  T
Q  265 tgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtattttt 325  Q
      ||||||| ||||||||| ||  ||||||  | || |||||||| |||| |||||| |||||    
T  11051091 aaaagtttttattgagtttttaaaagtattggtctaagtgacatagatttaattagtgttttt 11051029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 17763033 - 17763128
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||||||| |||| |||||| | | ||  |||||||||||| |||   ||||||||||||||||||||||  ||||| ||||||||| ||||    
T  17763033 tgtaaaagactaacattt-atcattctataaattttcaagtagcacgtaagtacatttttgaaataaaaagtaaaagagaaacttaacaagagaaaa 17763128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 41983956 - 41983920
Alignment:
Q  208 catttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41983956 catttttgaaataaaaagtaaagaagagatttaacaa 41983920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 30759430 - 30759360
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaag 225  Q
    ||||||| | ||||||||||||||| | | ||| ||||||||| |||||||   |||||||||||||||||    
T  30759430 tgtaaaacattaagattttatcattctataaaatttcaagtagtacataaatatatttttgaaataaaaag 30759360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 31719860 - 31719736
Alignment:
Q  171 tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaa 268  Q
    ||||||||| ||| ||||||||||||||| |||||   |||||| |||||||||| | |||| ||| ||||||  |||||||| || |||| |||   ||    
T  31719860 tttatcattctctaaaagttcaagtagcatataaatatatttttaaaataaaaagcagagaa-aaacttaacaagagaaaaaatatgtcattttacaaaa 31719762  T
Q  269 gttttcattgagtttctatgagtatt 294  Q
    |||| || ||||||||||| ||||||    
T  31719761 gtttccactgagtttctataagtatt 31719736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 1536933 - 1537012
Alignment:
Q  218 ataaaaagtaaagaagaaatttaacaag---aaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||| |||||||||||||||||||   |||||| || |||| ||||  ||||||| |||||||| ||| |||||||    
T  1536933 ataaaaagcaaagaagaaatttaacaagagaaaaaaatatgtcattttataaaagtttttattgagttcctacgagtatt 1537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 17623686 - 17623625
Alignment:
Q  97 gtgcactaaagcttccacgtacgcaagatctgggaaggagctccactttttggtgtattgta 158  Q
    |||||||||||||||||| |||||| |||  ||||||| | |||||  ||||||||||||||    
T  17623686 gtgcactaaagcttccacatacgcaggattcgggaaggggttccaccatttggtgtattgta 17623625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 28790830 - 28790887
Alignment:
Q  189 ttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga 246  Q
    ||||||||| |||||||   ||||||||||||||||  |||||||||| |||||||||    
T  28790830 ttcaagtagaacataaatatatttttgaaataaaaaacaaagaagaaacttaacaaga 28790887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 36964253 - 36964290
Alignment:
Q  49 tcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||||||||||  |||||||||||||||||||||    
T  36964253 tcatattatgtaagaagtataaaagactaagattttat 36964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 28441758 - 28441896
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatc 255  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||  |||||||||||||||||  |||||||||| |||||  |||||| || ||     
T  28441758 aaaagactaaaattttatcattatctaaaagttcaagtagcacataaaaccatttttgaaataaaaaacaaagaagaaacttaacaaaagaaagaatatg 28441857  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||  ||||||||||||||||| ||||||||||    
T  28441858 tcattttataaaagttttcattgagtttttatgagtatt 28441896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 12193225 - 12193118
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttcta 286  Q
    |||||||||||||||||||  ||||||||| | |||||| |||||| ||| |||||||||||||| || |||| ||||| |||||| |||||| ||||||    
T  12193225 agttcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaacaagaaaaaaaatgtcattttattaaagtttccattgaatttcta 12193126  T
Q  287 tgagtatt 294  Q
    ||||||||    
T  12193125 tgagtatt 12193118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 12437653 - 12437546
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttcta 286  Q
    |||||||||||||||||||  ||||||||| | |||||| |||||| ||| |||||||||||||| || |||| ||||| |||||| |||||| ||||||    
T  12437653 agttcaagtagcacataaatacatttttgatagaaaaagcaaagaaaaaacttaacaagaaaaaaaatgtcattttattaaagtttccattgaatttcta 12437554  T
Q  287 tgagtatt 294  Q
    ||||||||    
T  12437553 tgagtatt 12437546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 15452447 - 15452322
Alignment:
Q  171 tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatct--catgttattgaa 268  Q
    ||||||||| ||| |||||||||||||||| ||||  ||||||||||||||||   ||||||||||||||||||||||||| || |  ||| | ||  ||    
T  15452447 tttatcattctctaaaagttcaagtagcacgtaaatacatttttgaaataaaacacaaagaagaaatttaacaagaaaaaaaatatgtcatttaataaaa 15452348  T
Q  269 gttttcattgagtttctatgagtatt 294  Q
    || | |||||||||||||||||||||    
T  15452347 gtctccattgagtttctatgagtatt 15452322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 40436726 - 40436867
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatc 255  Q
    |||||||||||||||||||||| ||| ||| || || |||||||||||  | ||||| |||||||||| ||||||| ||| ||||  ||||||||| ||     
T  40436726 aaaagactaagattttatcattctctaaaattttaaatagcacataaatacgttttttaaataaaaagcaaagaaggaatctaacaaaagaaaaaatatg 40436825  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatttgt 297  Q
    |||| ||||  || ||| |||||||||||||| |||||||||    
T  40436826 tcattttataaaaatttccattgagtttctataagtatttgt 40436867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 41346199 - 41346337
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||| | ||||||||||| ||||| ||| |||||||| ||||||||  ||||||| |||||||||| |  ||| |||  |||||  |||||||||||     
T  41346199 aaaagattgagattttatcactatctaaaaattcaagtaacacataaatacatttttaaaataaaaagcagcgaaaaaacctaacaagagaaaaaacatg 41346298  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||||  ||| || |||||||||||||||||||||    
T  41346299 tcatgttataaaagcttccattgagtttctatgagtatt 41346337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 24681884 - 24681754
Alignment:
Q  157 taaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaac 252  Q
    ||||||||||| |||||| ||||| ||| | |||||||||||||||||||  ||||||||| | |||||  |||||||||| ||||||||   ||||||     
T  24681884 taaaagactaaaattttaatcattctctaagagttcaagtagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaagagaaaaaaat 24681785  T
Q  253 atctcatgttattgaagttttcattgagttt 283  Q
    || |||| ||||| |||||| ||||||||||    
T  24681784 atgtcattttattaaagtttccattgagttt 24681754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 354
Target Start/End: Original strand, 27674814 - 27675008
Alignment:
Q  164 ctaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgt 261  Q
    |||||||||||||||| |   |||||||||||||||||||||  |  ||||||||||||||| ||||||  || |||| |  |||||||| || |||| |    
T  27674814 ctaagattttatcattcttaaaaagttcaagtagcacataaatacgcttttgaaataaaaagcaaagaatgaacttaagaagagaaaaaatatgtcattt 27674913  T
Q  262 tattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    |||  |||||| || ||||||||||||||||||  | || | ||||||  ||| || |  |||||||||| |||||| ||||||| |||||||||    
T  27674914 tataaaagtttccaatgagtttctatgagtattggtctaggggacatatgtttaatgaacatttttcttatgttgcggtttggtttggttggtaa 27675008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 349
Target Start/End: Original strand, 1271453 - 1271617
Alignment:
Q  189 ttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattgaagttttcattgagtttcta 286  Q
    ||||||||| |||||||  ||| ||| |||  ||||| |||||||||| |||||||||  ||||| || |||| ||||| |||||| |||||||||||||    
T  1271453 ttcaagtagtacataaatacatgttttaaagtaaaagcaaagaagaaacttaacaagagaaaaaatatatcattttattaaagtttccattgagtttcta 1271552  T
Q  287 tgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||||||  | || ||||  || |||| |||||| |||||||||  ||||| ||||||| ||||    
T  1271553 tgagtattggtctaagtgatgtatatttaattagtgtttttcttatattgcggtttggtttggtt 1271617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 3129416 - 3129350
Alignment:
Q  185 aaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||||||||  |||||||||||||||| | |||||||||| ||||||||| ||||    
T  3129416 aaagttcaagtagcacataaatacatttttgaaataaaatgcaaagaagaaacttaacaagagaaaa 3129350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 4785541 - 4785645
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattga 267  Q
    |||||||||||||| | ||||||||||| |||||||  ||||||||||| ||||||  ||||||||| || |||  |||||||| ||||||| ||||| |    
T  4785541 ttttatcattatctaagagttcaagtagaacataaatacatttttgaaagaaaaagataagaagaaactttacaagagaaaaaatatctcattttattaa 4785640  T
Q  268 agttt 272  Q
    |||||    
T  4785641 agttt 4785645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 37162446 - 37162357
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga 246  Q
    |||||||||| |||||| ||||| ||| | |||||||||| ||||||||  ||||||||| | ||||||||||||||||| |||||||||    
T  37162446 aaaagactaaaattttaatcattctctaagagttcaagtaacacataaatacatttttgatagaaaaagtaaagaagaaacttaacaaga 37162357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 294
Target Start/End: Complemental strand, 12074010 - 12073876
Alignment:
Q  159 aaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatct 256  Q
    ||||||||||||||||||||| ||||||||||||||||| ||   ||  ||||||| || ||||||| |||| ||||| ||| ||  |||||||| || |    
T  12074010 aaagactaagattttatcattctcttaaagttcaagtagaac---aatacattttttaattaaaaagcaaagtagaaacttagcaagagaaaaaatatgt 12073914  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| || |  ||||||||||| ||||| ||||||||||    
T  12073913 cattttgtaaaagttttcattaagtttttatgagtatt 12073876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 9012623 - 9012536
Alignment:
Q  164 ctaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||| ||| |||||| ||||||||||||||  ||| |||||| | || || |||||||||| ||||||||| ||||    
T  9012623 ctaagattttatcattctctaaaagtttaagtagcacataaatacatctttgaagttaatagcaaagaagaaacttaacaagagaaaa 9012536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 44337042 - 44337174
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag---aaaaaacatctcat 259  Q
    ||||||||||||||||| | | ||||||||||||||  ||||| |  ||||||| |||||||| |||||||||| ||||||||   ||||||  | ||||    
T  44337042 actaagattttatcattctttaaaagttcaagtagcgtataaa-tactttttgacataaaaagaaaagaagaaacttaacaagagtaaaaaaattgtcat 44337140  T
Q  260 gttattgaagttttcattgagtttctatgagtat 293  Q
     ||||  ||||||| |||||||||||| ||||||    
T  44337141 tttataaaagttttgattgagtttctacgagtat 44337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 12660012 - 12659869
Alignment:
Q  209 atttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgac 304  Q
    ||||| ||||||||||||||| |||||| |||| |  |||||||| || |||| |||| ||||||| |||||||||||||||||||||  | ||||||||    
T  12660012 attttagaaataaaaagtaaataagaaacttaatacgagaaaaaatatgtcattttatagaagttt-cattgagtttctatgagtattgatttatgtgac 12659914  T
Q  305 atacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |||  ||| |||| | |||||| || |||| | ||||||| ||||    
T  12659913 atatgtttaattaatgtttttcctatgttgtggtttggtttggtt 12659869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 18755116 - 18754980
Alignment:
Q  161 agactaagatttt-atcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctc 257  Q
    ||||||||||||| |||||| ||| |  |||||||||| |||||||  |||| |||||| ||||| ||||||||||| ||||||  |||||||| ||  |    
T  18755116 agactaagattttcatcattctctaagtgttcaagtagaacataaatacattattgaaagaaaaaataaagaagaaacttaacaagagaaaaaaaattcc 18755017  T
Q  258 atgttattgaagttttcattgagtttctatgagtatt 294  Q
    || ||||  ||||||  ||||||||||||||| ||||    
T  18755016 attttataaaagtttctattgagtttctatgaatatt 18754980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 14185666 - 14185572
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||| ||| |||||||||||| ||| |||||| ||||| ||||||||  |||||||||||||| ||| ||  || ||| ||||||||| ||||    
T  14185666 taaaaggctacgattttatcattctctaaaagtttaagtaacacataaatacatttttgaaataacaagcaaccaataaacttaacaagagaaaa 14185572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 28801854 - 28802000
Alignment:
Q  153 attgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaattta-----acaagaa 247  Q
    |||| ||||||||||| |||||||||| ||| ||||||||| || || |||||  ||||||| |||||||| | |||||||| | |||     | |||||    
T  28801854 attgcaaaagactaaggttttatcattctctaaaagttcaattaacatataaatacatttttaaaataaaatgcaaagaagatacttaaaaacagaagaa 28801953  T
Q  248 aaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| || |||| ||||  || ||| |||||||||||||| ||||||    
T  28801954 aaaaaatgtcattttataaaaatttacattgagtttctataagtatt 28802000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 3155707 - 3155623
Alignment:
Q  267 aagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||||||||||||||||||||||||||  | ||||| | ||| |||| |||||| ||||| ||| |||||| ||||||| ||||    
T  3155707 aagttttcattgagtttctatgagtatttatctatgttatatatatttaattagtgttttttttatgttgcggtttggtttggtt 3155623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 11219245 - 11219383
Alignment:
Q  160 aagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga---aaaaacatc 255  Q
    |||||||| |||||| ||||| ||| | |||||||||| ||||||||  ||||||||| | |||||   ||||||||| ||||||| |   ||||| ||     
T  11219245 aagactaaaattttaatcattctctaagagttcaagtaacacataaatacatttttgatagaaaaaaccaagaagaaacttaacaaaagaaaaaaatatg 11219344  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||| ||||||||||||| ||| || |||||||    
T  11219345 tcattttattaaagttttcattgaatttataagagtatt 11219383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 40436673 - 40436743
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||||||| || |||||||||| |||| ||| ||||||| | ||||| ||  ||||||||||||||||||    
T  40436673 atagaccaagttaaaaacatggacaaaatgtaatcatattttataagaaatgaaaaagactaagattttat 40436743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 24681934 - 24681867
Alignment:
Q  17 tagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttta 85  Q
    ||||||||||| ||||| |||| |||| ||| || |||| ||||||| |||||||||||||| ||||||    
T  24681934 tagaccaaatt-aaaacgtggacaaaaagtactcctattttgtaagaaatataaaagactaaaatttta 24681867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 6879890 - 6879711
Alignment:
Q  159 aaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatct 256  Q
    ||||||||||||||||||||| ||| ||| |||||||| ||| ||||   ||| |||||||||||| ||||||||||| ||||||  |||||||| || |    
T  6879890 aaagactaagattttatcattctctaaaaattcaagtaacacgtaaaaatattgttgaaataaaaaataaagaagaaacttaacaagagaaaaaatatgt 6879791  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttg 334  Q
    ||| ||||| |||||||||||||| |||||||||||||  | || |||| |||  ||| |||||||||||||||||||||    
T  6879790 cattttattaaagttttcattgagcttctatgagtattagtctaggtgatatatgtttaattagtatttttcttaagttg 6879711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 349
Target Start/End: Complemental strand, 524665 - 524467
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| ||||| ||||||| ||| ||| ||||| ||||||||| |||||  |||||||||||||||||| |||||||||| ||||||  ||||||||     
T  524665 tgtaaaatactaatattttattattctctaaaagtccaagtagcatataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaat 524566  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || | || ||||  |||||| ||||||||||||||||||| |  | || |||||||| |||| ||||| |||||| ||| |||||| ||||||| ||||    
T  524565 atgttattttataaaagtttccattgagtttctatgagtactggtctaggtgacatagatttaattagaattttttttatgttgcggtttggtttggtt 524467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 349
Target Start/End: Original strand, 46147496 - 46147693
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag--aaaaaac 252  Q
    ||||||||||||||||||||| ||| ||| |||||||||| ||||||||||   ||||||  ||||||||| |||||||||| ||||||||  |||||      
T  46147496 tgtaaaagactaagattttattattgtctaaaagttcaagcagcacataaatatattttttgaataaaaagcaaagaagaaacttaacaagcaaaaaagt 46147595  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatttg--tatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||| ||||  |||||| ||| |||||| ||||||||||||  ||||| ||||| |||| |||||| ||||||||| |||||| ||||||| ||||    
T  46147596 atgtcat-ttataaaagtttccatcgagtttttatgagtatttgtctatgtaacatagatttaattagtgtttttcttatgttgcggtttggtttggtt 46147693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 354
Target Start/End: Original strand, 43202703 - 43202903
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacat 254  Q
    ||||| |||||||||| || ||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||  ||||| ||    
T  43202703 taaaatactaagattt-attattctctaaaagttcaagtagcacataaatacatttttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatat 43202801  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggt 352  Q
     | ||  |||  ||||||||||||||||| || |||||||  | ||  ||||||| |||| |||||| ||| | ||| |||| | ||||||| |||||||    
T  43202802 gttattatataaaagttttcattgagtttatacgagtattggtctagatgacatagatttaattagtgtttgtattatgttgtggtttggtttggttggt 43202901  T
Q  353 aa 354  Q
    ||    
T  43202902 aa 43202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 349
Target Start/End: Original strand, 27456631 - 27456811
Alignment:
Q  174 atcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaag-taaagaagaaatttaaca--agaaaaaacatctcatgttattgaagt 270  Q
    |||||| ||| |||||| ||||||||||||||  ||||||| ||||||||||  |||||||||| ||||||  |||||||| || |||| |||   ||||    
T  27456631 atcattctctaaaagtttaagtagcacataaatacattttttaaataaaaagcaaaagaagaaacttaacaagagaaaaaatatgtcattttacaaaagt 27456730  T
Q  271 tttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||||||||||||||||||||||||  | || | |||||| |||| |||||| ||||||||| |||||| ||||||| ||||    
T  27456731 tttcattgagtttctatgagtattggtctaggagacatagatttaattagtgtttttcttatgttgcggtttggtttggtt 27456811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 354
Target Start/End: Original strand, 48643076 - 48643274
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||||||||||||||||||| ||| |||  |||||||||||||||| | | |||  ||| |||||||||||||  ||| |||||  |||||||| ||     
T  48643076 aaaagactaagattttatcattctctaaaaaatcaagtagcacataaa-taagtttaaaaaaaaaaagtaaagaaagaatgtaacaagagaaaaaatatg 48643174  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatttgtat--gtgacatacattttattagtatttttcttaagttgcgatttggttcggttggta 353  Q
    |||| ||| | |||||||||||||||||||||||||||| ||||  |||| |||  ||| ||||  |||||||||| |||||| |||||||| |||||||    
T  48643175 tcatttta-taaagttttcattgagtttctatgagtattggtataggtgagatatgtttaattaacatttttcttatgttgcggtttggttcagttggta 48643273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 23032969 - 23033107
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacat 254  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||||||   |||||||||||||||||||||||| ||| |||||||||  ||||| ||    
T  23032969 taaaagattaagattttatcattctct-aaagttcaagtagcacataaatatatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatat 23033067  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| || |   ||||| | |||||||||||||||||||    
T  23033068 ttcattttgtaagagtttccgttgagtttctatgagtatt 23033107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 354
Target Start/End: Complemental strand, 29211380 - 29211212
Alignment:
Q  186 aagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgttattgaagttttcattgagtttct 285  Q
    ||||||||||||||||||||  ||||||| |||||||| | |||||||||| ||||||||| |||  || |||| ||||  |||||||||||||||||||    
T  29211380 aagttcaagtagcacataaatacatttttaaaataaaa-gaaaagaagaaacttaacaagagaaacaatatcattttataaaagttttcattgagtttct 29211282  T
Q  286 atgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggtaa 354  Q
    |||| ||||  | || |||||||| |||| |||||| |||| |||| || |||| |||||| |||||||||    
T  29211281 atgaatattggtctaggtgacatagatttaattagtgttttccttatgtcgcga-ttggtttggttggtaa 29211212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 349
Target Start/End: Original strand, 40849156 - 40849342
Alignment:
Q  169 attttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca----agaaaaaacatctcatgttat 264  Q
    ||||||||||| ||| |||||||||| | ||||||||  |||||||||||||||||| ||| |||||| ||||||    | |||||| || || | ||||    
T  40849156 attttatcattctctaaaagttcaaggaacacataaatacatttttgaaataaaaagcaaaaaagaaacttaacaacagaaaaaaaatatgtcgttttat 40849255  T
Q  265 tgaagttttcattgagtttctatgagtatttgtat--gtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
      |||||| ||||||||||||||||||||| || |   ||||||| |||| |||||  || |||||| |||||| ||||||| ||||    
T  40849256 aaaagtttccattgagtttctatgagtattggtctcgatgacatagatttaattagagttgttcttatgttgcggtttggtttggtt 40849342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 47646515 - 47646417
Alignment:
Q  198 cacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||||  ||||||| ||||||||||||||||||||| ||||||  |||||||| || |||| ||||| || ||| ||| |||||||||||||||||    
T  47646515 cacataaatacattttttaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttattaaaatttccatcgagtttctatgagtatt 47646417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 22298820 - 22298957
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatc-t 256  Q
    |||||||||| |||| |||||||||  | |||||||| | ||||||||   |||||||| | |||||| ||| |||||| ||||||||| |||| ||  |    
T  22298820 aaaagactaaaatttaatcattatcgaagagttcaaggaccacataaataaatttttgatagaaaaagcaaaaaagaaacttaacaagagaaaaaattgt 22298919  T
Q  257 catgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||| || || ||||||||||||| ||||||||||||||    
T  22298920 cattttgttaaagttttcattgaatttctatgagtatt 22298957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 11399408 - 11399601
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| ||| ||||||||||||| ||| ||||||||||||| |||| ||  |||||| ||||||||||| || ||||||| ||||||  ||| ||||     
T  11399408 tgtaaaatacttagattttatcattctctaaaagttcaagtagaacat-aatacattttagaaataaaaagcaacgaagaaacttaacaagagacaaaat 11399506  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacatttt-attagtatttttcttaagttgcgatttggtt 344  Q
    || |||| ||||  |||||| |||||| |||||| || ||||  | || |||||||| ||||| |||||| ||||| ||| | |||| |||||||    
T  11399507 atgtcattttataaaagtttccattgaatttctaagattattggtctaggtgacatagattttaattagtgtttttattatgctgcggtttggtt 11399601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 349
Target Start/End: Complemental strand, 11834259 - 11834062
Alignment:
Q  158 aaaagactaagatttta-tcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga---aaaaaca 253  Q
    |||||||||| |||||| ||||| | | | |||||||||||||||||||   |||||||| | |||||  |||||||||| ||| |||||   ||||| |    
T  11834259 aaaagactaaaattttaatcattctttaagagttcaagtagcacataaatatatttttgatagaaaaaacaaagaagaaacttagcaagagaaaaaaaga 11834160  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    | |||| ||||| |||||| |||||| |||||||||||||| ||  |  ||| ||| |||| |||| |||||||||||  ||||| ||||||| ||||    
T  11834159 tgtcatattattaaagtttccattgaatttctatgagtattggtcaagatgatatatatttaattaatatttttcttatattgcggtttggtttggtt 11834062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 8118074 - 8117938
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatc 255  Q
    |||||| ||||||||||| ||||||| |||| ||||||||||||||||  | |||||||||||||||| ||||||  || | |||  ||||||||| ||     
T  8118074 aaaagattaagattttat-attatctaaaagatcaagtagcacataaatacgtttttgaaataaaaagcaaagaatgaactaaacaaaagaaaaaatat- 8117977  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||   ||||| |||||||||| ||||||||||    
T  8117976 tcattttataagagtttccattgagtttatatgagtatt 8117938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 2734573 - 2734642
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||||||| |||| |||||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  2734573 atagaccaaatt-aaaatatggataaaaagtaatcttattatgtaagaaatgtaaaagactaagattttat 2734642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 27100367 - 27100202
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaa-aaaacatctcatgttattgaagttttcattgagtttct 285  Q
    ||||||||||||| |||||   ||||| |||| |||||| |||||||||| |||||||||| |||| |  |||| ||||| ||||||||||||| ||| |    
T  27100367 agttcaagtagcatataaatatattttggaaagaaaaagcaaagaagaaacttaacaagaaaaaaaaaagtcattttattaaagttttcattgaatttat 27100268  T
Q  286 atgagtatttgtat--gtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||||| ||||  |||| ||| |||| |  ||| |||||||||  ||||| ||||||| ||||    
T  27100267 ataagtattggtataagtgatatatatttaaagagtgtttttcttatattgcggtttggtttggtt 27100202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 349
Target Start/End: Original strand, 27177936 - 27178101
Alignment:
Q  187 agttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaag-aaaaaacatctcatgttattgaagttttcattgagtttct 285  Q
    ||||||||||||| |||||   ||||| |||| |||||| |||||||||| |||||||| |||||| |  |||| ||||| ||||||||||||| ||| |    
T  27177936 agttcaagtagcatataaatatattttggaaagaaaaagcaaagaagaaacttaacaagaaaaaaaaaagtcattttattaaagttttcattgaatttat 27178035  T
Q  286 atgagtatttgtat--gtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    || |||||| ||||  |||| ||| |||| |  ||| |||||||||  ||||| ||||||| ||||    
T  27178036 ataagtattggtataagtgatatatatttaaagagtgtttttcttatattgcggtttggtttggtt 27178101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 48643023 - 48643093
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||||||| || |||||||||| |||| ||| ||||||| ||||||| ||| ||||||||||||||||||    
T  48643023 atagaccaagttaaaaacatggacaaaacgtaatcatattttgtaagaaatacaaaagactaagattttat 48643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 20334893 - 20335056
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattga 267  Q
    |||||||||| ||  | |||||| ||||||| ||||  |||||||||   |||||| ||| ||||||  ||||||||  ||||| || |||  ||||| |    
T  20334893 ttttatcattttccgagagttcatgtagcacgtaaatacatttttgatcgaaaaagcaaaaaagaaacataacaagagaaaaaatatgtcaatttattaa 20334992  T
Q  268 agttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttctta 329  Q
    |||||||||||| ||||||||||||||  | || |||| |||||||| |||||| |||||||||    
T  20334993 agttttcattgaatttctatgagtattggtctaggtgatatacatttaattagtgtttttctta 20335056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 23729660 - 23729753
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||||||||||| ||||  || ||| ||||||||||  || ||  |||||||||||||||||| |||||||||| ||| ||||| ||||    
T  23729660 aaaagactaagattttaacatttactaaaaattcaagtagcgtatgaatacatttttgaaataaaaagcaaagaagaaacttatcaagagaaaa 23729753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 26214894 - 26214813
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    |||||||||| ||| |||| |  |||||||| |||||||| ||  |||||||||||||||||| |||||||||| |||||||    
T  26214894 actaagatttcatcgttatttataagttcaaatagcacatgaatacatttttgaaataaaaagcaaagaagaaacttaacaa 26214813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 26956159 - 26956224
Alignment:
Q  186 aagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||| ||||| |||||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  26956159 aagttcaaatagcatataaatacatttttcaaataaaaagtaaagaagaaacttaacaaaaaaaaa 26956224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 7528986 - 7528921
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaa 232  Q
    ||||||||||||||| ||| |||||||||||| |||| |||   ||||||||||||||||||||||||    
T  7528986 taagattttatcattctctaaaagttcaagtaacacaaaaa--tatttttgaaataaaaagtaaagaa 7528921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 7697589 - 7697718
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatt---tttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaacatctcatgttat 264  Q
    ||||||||||  || | |||||||||| ||||||||  ||||   ||| ||| ||| | ||||||||||| |||||||  ||||||| || || | ||||    
T  7697589 ttttatcattccctaagagttcaagtaacacataaatacattgtttttaaaagaaacattaaagaagaaacttaacaatagaaaaaatatgtctttttat 7697688  T
Q  265 tgaagttttcattgagtttctatgagtatt 294  Q
    | ||||||||||||||||||||||||||||    
T  7697689 taaagttttcattgagtttctatgagtatt 7697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 16359573 - 16359613
Alignment:
Q  211 ttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  16359573 ttttgaaataaaaagtaaagaagaaatttaacaagagaaaa 16359613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 349
Target Start/End: Original strand, 29628510 - 29628697
Alignment:
Q  167 agattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga----aaaaacatctcatgtt 262  Q
    |||| |||| ||| ||| |||||| ||||||||||||||   ||| | |||||||||||||| ||||||| |||||| ||    ||||| || | || ||    
T  29628510 agatattattattctctaaaagtttaagtagcacataaatatattctcgaaataaaaagtaatgaagaaacttaacacgagaaaaaaaaaatgtaat-tt 29628608  T
Q  263 attgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    ||  |||||| |||||||||||||| ||| ||  |||| ||||||||  ||| |||||| ||||||||| |||||| ||||||| ||||    
T  29628609 ataaaagtttccattgagtttctatcagtgtttgtgtaggtgacatagctttaattagtgtttttcttatgttgcggtttggtttggtt 29628697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 35495693 - 35495788
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||||||| | ||||||||||||| | | ||||||||||||||||||||| | | | ||| ||| ||||| |||||||||| ||||||||| ||||    
T  35495693 tgtaaaagattgagattttatcattctgtaaaagttcaagtagcacataaa-taaatattggaatgaaaagcaaagaagaaacttaacaagagaaaa 35495788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 23675663 - 23675726
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaa 218  Q
    ||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||  |||||||||||    
T  23675663 tgtaaaagattaagattttatcattctctaaaagttcaaatagcatataaatacatttttgaaa 23675726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 31011507 - 31011432
Alignment:
Q  209 atttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgttattgaagttttcattgagttt 283  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||| |||| || ||||  |||||| ||||||||||    
T  31011507 atttttgaaataaaaagtatagaagaaacttaacaagagaaaaatatcttattttataaaagtttccattgagttt 31011432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 2734622 - 2734672
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaa 205  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||| ||||    
T  2734622 tgtaaaagactaagattttatcattctctaaaagttcaattagcacgtaaa 2734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 354
Target Start/End: Complemental strand, 23410948 - 23410812
Alignment:
Q  222 aaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattgaagttttcattgagtttctatgagtatttgtatg--tgacatacattttatta 317  Q
    |||| |||||||||| |||||||||  ||||| || |||| |||| |||||| | |||||||||||||||||||| |  ||  ||| ||| |||| | ||    
T  23410948 aaagcaaagaagaaacttaacaagagaaaaaatatttcattttatagaagttcttattgagtttctatgagtattaggttggatgagataaatttaacta 23410849  T
Q  318 gtatttttcttaagttgcgatttggttcggttggtaa 354  Q
     ||||| ||||| |||||| ||| |||||||||||||    
T  23410848 atatttctcttatgttgcggtttagttcggttggtaa 23410812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 26524733 - 26524647
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaa 241  Q
    ||||||||| |||||||| ||| || | | |||| ||||  ||||||| ||  |||||||||||||||||||||||||| |||||||    
T  26524733 tgtaaaagattaagatttcatcgttctttaaaagatcaaaaagcacattaaaacatttttgaaataaaaagtaaagaaggaatttaa 26524647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 27214988 - 27214848
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaac 252  Q
    |||||||||||||||| |  ||||| | | ||||||||| | |||||||||  ||||||||| | |||||| |||||||||| |||||  |||| || |     
T  27214988 tgtaaaagactaagatatcttcattctttaaaagttcaaattgcacataaatacatttttgagaaaaaaagcaaagaagaaacttaacaaaagataatat 27214889  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||  |||||| |||||| ||||||||||||||    
T  27214888 atgtcat-ttataaaagtttccattgaatttctatgagtatt 27214848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 2854584 - 2854625
Alignment:
Q  210 tttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  2854584 tttttgaaataaaaagcaaagaagaaatttaacaagagaaaa 2854625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 30079370 - 30079277
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaa 251  Q
    ||||| ||||||||||||| || ||| ||| || ||||||||||||||    ||||| |||||||||  ||||||||||| |||||||| ||||    
T  30079370 aaaaggctaagattttatctttctctaaaattttaagtagcacataaatatgttttttaaataaaaaacaaagaagaaatctaacaagagaaaa 30079277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 1812820 - 1812906
Alignment:
Q  210 tttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||| | |||||| |||||||||| | |||||||  ||||| || |||| ||||| || |||||||||| ||||||||||||||    
T  1812820 tttttgatagaaaaagcaaagaagaaactcaacaagagaaaaaatatgtcattttattaaaattttcattgaatttctatgagtatt 1812906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 10338649 - 10338586
Alignment:
Q  22 caaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttta 85  Q
    |||| ||||||| |||| |||| ||| ||||||| ||||||||||| |||||||||| ||||||    
T  10338649 caaaattaaaacgtggacaaaaagtaatcatattttgtaagagatacaaaagactaaaatttta 10338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 25007611 - 25007688
Alignment:
Q  220 aaaaagtaaagaagaaatttaacaag---aaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    ||||||||||||||||| ||||||||   |||||| || |||| ||||| || |||||||| | ||||||||||||||    
T  25007611 aaaaagtaaagaagaaacttaacaagagaaaaaaaaatgtcattttattaaaattttcatttaatttctatgagtatt 25007688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 30855391 - 30855458
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaa 232  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||  | ||||| |||||||||| ||||||    
T  30855391 taagattttatcattctctaaaagttcgagtaacacataaatacgtttttaaaataaaaagcaaagaa 30855458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 23675771 - 23675832
Alignment:
Q  270 ttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttctta 329  Q
    |||||||||||||||||||||||||  | || |||||||| |||| |||||| |||||||||    
T  23675771 ttttcattgagtttctatgagtattagtttaggtgacataaatttaattagtgtttttctta 23675832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 16535594 - 16535526
Alignment:
Q  17 tagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttta 85  Q
    ||||||||||||||||| |  | |||| ||| ||||||| |||| || ||| |||||||||||||||||    
T  16535594 tagaccaaatttaaaacgtaaaaaaaatgtaatcatattttgtatgaaatacaaaagactaagatttta 16535526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 16630068 - 16630136
Alignment:
Q  17 tagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttta 85  Q
    ||||||||||||||||| |  | |||| ||| ||||||| |||| || ||| |||||||||||||||||    
T  16630068 tagaccaaatttaaaacgtaaaaaaaatgtaatcatattttgtatgaaatacaaaagactaagatttta 16630136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 26151 - 26292
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaac 252  Q
    ||||||| ||||| ||||||||||| | | |||||||||||| ||||||||  |||||||||||||||||| |||||||||| ||||||  ||||||||     
T  26151 tgtaaaatactaatattttatcattctttaaaagttcaagtaacacataaatacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaat 26250  T
Q  253 atctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    || |||| ||||  |||||| |||||||||||||||||||||    
T  26251 atgtcattttataaaagtttccattgagtttctatgagtatt 26292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 354
Target Start/End: Original strand, 44651251 - 44651451
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||||||  | ||||| |||||||||  ||||||| ||| |||||  |||||||| ||     
T  44651251 aaaagactaagattttttcattctctaaaatttcaagtagcacataaatacgttttttaaataaaaaacaaagaaggaatctaacaagagaaaaaatatg 44651350  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggttggta 353  Q
    |||| ||||  |||||| |||||| ||||||||||||||  | || |||| |||  ||| ||||  |||||||||| |||||| ||||||||||||||||    
T  44651351 tcattttataaaagtttccattgaatttctatgagtattggtctaagtgagatatgtttaattaacatttttcttatgttgcggtttggttcggttggta 44651450  T
Q  354 a 354  Q
    |    
T  44651451 a 44651451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 158 - 349
Target Start/End: Complemental strand, 22472858 - 22472663
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatc 255  Q
    |||| ||||||||||||||||| ||| ||||||||||||| |||||||  ||||||||||||||||   ||| |||||| ||||||  |||||||| ||     
T  22472858 aaaatactaagattttatcattttctaaaagttcaagtagaacataaatacatttttgaaataaaagacaaataagaaacttaacaagagaaaaaatatg 22472759  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    |||| | || ||  |||||||||||||||||||||||||  | || |||| ||| | || |||||| ||||||||| |||||| ||| ||| ||||    
T  22472758 tcatttgatagatattttcattgagtttctatgagtattagtttaggtgatatatagttaattagtgtttttcttatgttgcggtttagtttggtt 22472663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 329
Target Start/End: Original strand, 48168973 - 48169136
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaattta--acaagaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | ||||||||||| |||||||  ||||||||||| ||| || |||||||||| |||  | ||||||||| || |||| ||||| |    
T  48168973 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaatagcaaagaagaaacttagcagaagaaaaaatatgtcattttattaa 48169072  T
Q  268 agttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttctta 329  Q
    |||||||||| ||||||| ||||||||  | || |||| ||| |||||||||||||||||||||    
T  48169073 agttttcattaagtttctttgagtattggtctaagtgatatatattttattagtatttttctta 48169136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 42363011 - 42362875
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctc 257  Q
    |||| ||||||||||||||||| ||| ||||| |||| ||||||||||  | |||||||||||||||||||||||| || | ||||||| |||| || ||    
T  42363011 aaaatactaagattttatcattctctaaaagtacaagcagcacataaatacgtttttgaaataaaaagtaaagaaggaactaaacaagagaaaaaatgtc 42362912  T
Q  258 atgttattgaagttttcattgagtttctatgagtatt 294  Q
    || ||||  |||||| |||||||||| || |||||||    
T  42362911 attttataaaagtttccattgagtttataagagtatt 42362875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 55467422 - 55467298
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa--gaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | ||||||||||| |||||||  ||||||||||| |||||  | |||||||| |||||||  |||||||||| |||| ||||| |    
T  55467422 ttttatcattctctaagagttcaagtagtacataaatacatttttgaaagaaaaa--acagaagaaacttaacaaaagaaaaaacatgtcattttattaa 55467325  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    |||||||||||||||||||||||||||    
T  55467324 agttttcattgagtttctatgagtatt 55467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 4280579 - 4280709
Alignment:
Q  161 agactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctca 258  Q
    ||||||||||||||||||| ||| ||||| |||||| ||| |||   |||||||||||||||||  |||||| ||| ||||||  |||||||| || |||    
T  4280579 agactaagattttatcattttctaaaagtgcaagtaacacgtaagtacatttttgaaataaaaaacaaagaataaacttaacaagagaaaaaatatgtca 4280678  T
Q  259 tgttattgaagttttcattgagtttctatga 289  Q
    | |||| ||||||||||||||||||||||||    
T  4280679 ttttatagaagttttcattgagtttctatga 4280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 294
Target Start/End: Complemental strand, 10481406 - 10481275
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaacatctcatgtt 262  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||||||||||   ||||||||||||||||||| |||| || || | ||    
T  10481406 actaagattttatcattttctaaaagttaaagtagcacataaatacatttttgaaataaaaatctaagaagaaatttaacaagacaaaaaatgtcttttt 10481307  T
Q  263 attgaagttttcattgagtttctatgagtatt 294  Q
    ||  || ||| |||| ||||||||| ||||||    
T  10481306 atacaaatttccattaagtttctataagtatt 10481275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 2832168 - 2832041
Alignment:
Q  169 attttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattg 266  Q
    ||||||||||| ||  |||||||||||||||||||||   ||||||||||||||||  |||||||||| ||||||  |||||||| || |||| ||||      
T  2832168 attttatcattctcgaaaagttcaagtagcacataaatatatttttgaaataaaaaccaaagaagaaacttaacaagagaaaaaaaatgtcattttataa 2832069  T
Q  267 aagttttcattgagtttctatgagtatt 294  Q
    |||||| |||||||||| ||||||||||    
T  2832068 aagtttacattgagtttttatgagtatt 2832041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 25919047 - 25918909
Alignment:
Q  158 aaaagactaagatttt-atcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatc 255  Q
    |||||||||| ||||| |||||| ||| | |||||||||||||||||||  ||||||||||| |||||  |||||| ||| ||||||||| |||||  |     
T  25919047 aaaagactaaaatttttatcattctctaagagttcaagtagcacataaatacatttttgaaacaaaaaacaaagaaaaaacttaacaagataaaaatttg 25918948  T
Q  256 tcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||| ||||| |||||| |||||||||||||| ||||||    
T  25918947 tcattttattaaagtttccattgagtttctataagtatt 25918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 349
Target Start/End: Original strand, 26758516 - 26758713
Alignment:
Q  158 aaaagactaagatt-ttatcattatcttaaagttcaagtagcacataaagtcatttttg-aaataaaaagtaaagaagaaatttaacaaga--aaaaaca 253  Q
    |||||||||| ||| |||||||| | | | ||||||||||| |||| ||  |||||||  ||| |||||||||| |||||| |||||||||  ||||| |    
T  26758516 aaaagactaaaattgttatcattctgtaagagttcaagtagtacattaatacatttttttaaagaaaaagtaaataagaaacttaacaagagaaaaaata 26758615  T
Q  254 tctcatgttattgaagttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggttcggtt 349  Q
    | |||| | ||| |||||||||||||||||||||| ||||| ||  | |||| ||| ||||||||||| |||||||||  ||||| ||||||| ||||    
T  26758616 tgtcatttgattaaagttttcattgagtttctatgggtattggttcaagtgatatatattttattagtgtttttcttatattgcggtttggtttggtt 26758713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 54122623 - 54122749
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac--aagaaaaaacatctcatgttattga 267  Q
    |||||||||| ||| | |||||||||||||||||||  ||||||| ||| |||||| ||| |||||| |||||   |||||||| || |||| ||||| |    
T  54122623 ttttatcattctctaagagttcaagtagcacataaatacatttttaaaagaaaaagcaaataagaaacttaaccagagaaaaaatatgtcatattattaa 54122722  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    ||||| |||||||||||||||| ||||    
T  54122723 agtttccattgagtttctatgaatatt 54122749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 4669017 - 4669085
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaa 223  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  4669017 tgtaaaatactaatattttatcattctctaaaagttcaagtagcacataaatacatttttgaaataaaa 4669085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 51660742 - 51660657
Alignment:
Q  211 ttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
    |||||||||||||||||||||||||| ||| ||  |||||||| || |||| ||||  ||||||||||||||||||||| ||||||    
T  51660742 ttttgaaataaaaagtaaagaagaaacttatcaagagaaaaaatatgtcattttataaaagttttcattgagtttctataagtatt 51660657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 50578792 - 50578654
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga---aaaaacat 254  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||||   | ||||| |||||||||||||||||  ||| ||||||||   ||||| ||    
T  50578792 aaaagactaagattttatcattctctaaaatttcaagtggcacataagcacgttttt-aaataaaaagtaaagaaagaatctaacaagataaaaaaatat 50578694  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| ||||  ||  || |||||||||||||||||||||    
T  50578693 gtcattttataaaaacttccattgagtttctatgagtatt 50578654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 8355630 - 8355756
Alignment:
Q  171 tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaac---aagaaaaaacatctcatgttattga 267  Q
    ||||||||| ||| | |||||||||||||||||||  ||||||| | | |||||  |||||||||| |||||    |||||||| || |||| ||||| |    
T  8355630 tttatcattctctaagagttcaagtagcacataaatacattttttatagaaaaaacaaagaagaaacttaactaagagaaaaaaaatgtcattttattaa 8355729  T
Q  268 agttttcattgagtttctatgagtatt 294  Q
    |||||||||| | ||||||||||||||    
T  8355730 agttttcattaaatttctatgagtatt 8355756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 17144527 - 17144439
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtca-tttttgaaataaaaagtaaagaagaaatttaacaag 245  Q
    |||||||||||||||||| | ||| | ||||||||| ||||| |||||  || ||||| |||||||||| |||||| ||||||||||||    
T  17144527 aaaagactaagattttataaatatttaaaagttcaaatagcatataaatacatttttttaaataaaaagcaaagaataaatttaacaag 17144439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 20846762 - 20846901
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacat 254  Q
    ||||||| ||||||||||||||| ||| |||||||||  |  ||||||   ||||||| ||||||||| ||||||||||| || |||  |||||||| ||    
T  20846762 taaaagattaagattttatcattctctaaaagttcaaacaatacataattacattttttaaataaaaaataaagaagaaactttacaagagaaaaaatat 20846861  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatt 294  Q
     |||| ||||  |||||||  ||||| || ||||||||||    
T  20846862 gtcattttataaaagtttttgttgagcttatatgagtatt 20846901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 293
Target Start/End: Original strand, 21562850 - 21562977
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgtt 262  Q
    |||||||||||||||  ||| |||||||||||| |||||||  ||||||||||||||||||  |||||| || ||||||  |||||||| || |||| |     
T  21562850 taagattttatcatt--ctttaagttcaagtagtacataaatacatttttgaaataaaaagcgaagaag-aacttaacaagagaaaaaatatgtcatttc 21562946  T
Q  263 attgaagttttcattgagtttctatgagtat 293  Q
    ||  || ||| ||| ||||||||||||||||    
T  21562947 ataaaaatttacatcgagtttctatgagtat 21562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 329
Target Start/End: Original strand, 45629480 - 45629656
Alignment:
Q  158 aaaagactaagat-tttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga--aaaaacat 254  Q
    |||||||||| || ||||||||| | | ||| ||||||||| |||||||   |||||||||| |||||  |||||||||| ||||||| |  ||||| ||    
T  45629480 aaaagactaaaatatttatcattctttaaaaattcaagtagtacataaatagatttttgaaagaaaaaacaaagaagaaacttaacaaaataaaaaatat 45629579  T
Q  255 ctcatgttattgaagttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttctta 329  Q
     |||| ||||| |||||| | ||||  ||||||||||||| ||  | |||| ||| |||| |||||| |||||||||    
T  45629580 gtcattttattaaagtttccgttgaaattctatgagtattggtccaagtgatatatatttaattagtgtttttctta 45629656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 44662226 - 44662291
Alignment:
Q  159 aaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaa 224  Q
    ||||||||||||||||||||| | | |||||||||||| || |||||   ||||||||||||||||    
T  44662226 aaagactaagattttatcattctttaaaagttcaagtaacatataaatatatttttgaaataaaaa 44662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 46253232 - 46253107
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaaga-agaaatttaacaagaaaaaacatctcatgttattgaa 268  Q
    |||||||||| ||| | ||||||||||  |||||||  ||||||| ||| |||||||||||| |  |  | || |||| |||  || |||| ||||| ||    
T  46253232 ttttatcattctctaagagttcaagtactacataaatacatttttaaaagaaaaagtaaagatattagctaaaaaagagaaacaatgtcattttattaaa 46253133  T
Q  269 gttttcattgagtttctatgagtatt 294  Q
    ||||||||||||||||||||||||||    
T  46253132 gttttcattgagtttctatgagtatt 46253107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 38651765 - 38651686
Alignment:
Q  216 aaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgttattgaagttttcattgagtttctatgagtat 293  Q
    |||||||||| ||||||||||| |||||  |||||||| || | || ||||  |||||| ||||||||||||||||||||    
T  38651765 aaataaaaagcaaagaagaaatctaacaagagaaaaaatatgtaattttataaaagtttccattgagtttctatgagtat 38651686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 344
Target Start/End: Complemental strand, 45914985 - 45914805
Alignment:
Q  170 ttttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga----aaaaacatctcatgttatt 265  Q
    |||||||||| | | | |||| |||||| |||||||  ||||||| ||| |||||  ||| |||||| |||||||||    ||||| || |||| |||||    
T  45914985 ttttatcattctttaagagtttaagtagtacataaatacatttttaaaagaaaaaacaaacaagaaacttaacaagagaaaaaaaatatgtcattttatt 45914886  T
Q  266 gaagttttcattgagtttctatgagtatttgt--atgtgacatacattttattagtatttttcttaagttgcgatttggtt 344  Q
     ||||||||||||||  ||| |||||||| ||  |  ||| ||| |||| ||||||||||||||||  ||||| |||||||    
T  45914885 aaagttttcattgagcctctttgagtattggtccaaatgatatatatttaattagtatttttcttatattgcggtttggtt 45914805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 5640521 - 5640474
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaa 205  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| ||||    
T  5640521 aaaagactaagattttatcattctctaaaatttcaagtagcacgtaaa 5640474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 27054367 - 27054462
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaagaaaaaaca 253  Q
    |||||| ||| |||| ||||||  || | |||||||||||||||||||  ||||||||| | |||||  |||||||||| ||||||| | ||||||    
T  27054367 aaaagagtaaaatttaatcattcactaagagttcaagtagcacataaatacatttttgatagaaaaaacaaagaagaaacttaacaacagaaaaca 27054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 55130030 - 55130077
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaa 205  Q
    |||| ||||||||||||||||||| | ||||||||||||||| |||||    
T  55130030 aaaaaactaagattttatcattatttaaaagttcaagtagcaaataaa 55130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 4280523 - 4280593
Alignment:
Q  16 atagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    ||||||||||||||||||||||| ||||  || ||||||| ||||| | ||  || |||||||||||||||    
T  4280523 atagaccaaatttaaaacatggacaaaaaataatcatattttgtaataaatgcaacagactaagattttat 4280593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 20846714 - 20846780
Alignment:
Q  20 accaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagattttat 86  Q
    |||||||| ||||| |||| | || ||| | ||||||||||||| |||||||||| |||||||||||    
T  20846714 accaaattaaaaacgtggacacaaagtaattatattatgtaagaaatataaaagattaagattttat 20846780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 36330469 - 36330383
Alignment:
Q  158 aaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaa 244  Q
    |||||||||||||| ||||||| ||| ||| |||||||||||| ||||   || ||| |||||||||  || ||||||| |||||||    
T  36330469 aaaagactaagattgtatcattctctaaaaattcaagtagcacgtaaatatatctttaaaataaaaaacaaggaagaaacttaacaa 36330383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 51660965 - 51660895
Alignment:
Q  15 aatagaccaaatttaaaacatggataaaaggtattcatattatgtaagagatataaaagactaagatttta 85  Q
    ||||||||||||||||||| || | |||| ||| ||||||| ||||||| ||| |||| ||||||| ||||    
T  51660965 aatagaccaaatttaaaacgtgaacaaaaagtaatcatattctgtaagaaatacaaaatactaagacttta 51660895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 38681510 - 38681571
Alignment:
Q  157 taaaagactaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaa 218  Q
    ||||| ||||||||| ||||||| ||| ||||||||||||||| ||| |  |||||||||||    
T  38681510 taaaatactaagattatatcattttctaaaagttcaagtagcatatatatacatttttgaaa 38681571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 52632311 - 52632356
Alignment:
Q  155 tgtaaaagactaagattttatcattatcttaaagttcaagtagcac 200  Q
    ||||||| ||||||||||||||||| ||| ||| ||||||||||||    
T  52632311 tgtaaaatactaagattttatcattctctaaaacttcaagtagcac 52632356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 3067 - 3182
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgtta 263  Q
    ||||||||||||||| ||| ||||||||||||||||| | ||    ||||| |||||||| ||||||||||| ||||||||| ||||| || |||| |||    
T  3067 taagattttatcattgtctaaaagttcaagtagcacaaatag----ttttgcaataaaaattaaagaagaaacttaacaagagaaaaatatgtcatttta 3162  T
Q  264 ttgaagttttcattgagttt 283  Q
    |  |||||||||||||||||    
T  3163 taaaagttttcattgagttt 3182  T

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Target: scaffold0688; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 4734 - 4849
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaacaaga-aaaaacatctcatgtta 263  Q
    ||||||||||||||| ||| ||||||||||||||||| | ||    ||||| |||||||| ||||||||||| ||||||||| ||||| || |||| |||    
T  4734 taagattttatcattgtctaaaagttcaagtagcacaaatag----ttttgcaataaaaattaaagaagaaacttaacaagagaaaaatatgtcatttta 4829  T
Q  264 ttgaagttttcattgagttt 283  Q
    |  |||||||||||||||||    
T  4830 taaaagttttcattgagttt 4849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 1471 - 1589
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatg 260  Q
    ||||||||||||||||| ||| ||||||||||||||||| | ||    ||||| |||||||| |||||| |||| ||||||  |||||||| || ||||     
T  1471 actaagattttatcattgtctaaaagttcaagtagcacaaatag----ttttgcaataaaaattaaagaggaaacttaacaagagaaaaaatatgtcatt 1566  T
Q  261 ttattgaagttttcattgagttt 283  Q
    ||||  |||||||||||||||||    
T  1567 ttataaaagttttcattgagttt 1589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 8040 - 8158
Alignment:
Q  163 actaagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatg 260  Q
    ||||||||||||||||| ||| ||||||||||||||||| | ||    ||||| |||||||| |||||| |||| ||||||  |||||||| || ||||     
T  8040 actaagattttatcattgtctaaaagttcaagtagcacaaatag----ttttgcaataaaaattaaagaggaaacttaacaagagaaaaaatatgtcatt 8135  T
Q  261 ttattgaagttttcattgagttt 283  Q
    ||||  |||||||||||||||||    
T  8136 ttataaaagttttcattgagttt 8158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 427941 - 428121
Alignment:
Q  165 taagattttatcattatcttaaagttcaagtagcacataaagtcatttttgaaataaaaagtaaagaagaaatttaaca--agaaaaaacatctcatgtt 262  Q
    ||||||||||||||| ||| | | |||  ||| ||||||||   |||||||||||||||||  ||||||||| ||||||  |||||||| || |||| ||    
T  427941 taagattttatcattctctaacaattcttgtaacacataaatatatttttgaaataaaaaggcaagaagaaacttaacaagagaaaaaatatgtcatttt 428040  T
Q  263 attgaagttttcattgagtttctatgagtatt--tgtatgtgacatacattttattagtatttttcttaagttgcgatttg 341  Q
    ||  |||||||||||||||||  |||||||||  | |||||||||||  ||| |||| ||||||||| | |||| ||||||    
T  428041 ataaaagttttcattgagttttaatgagtattggtttatgtgacatatgtttaattattatttttctgatgttgagatttg 428121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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