View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9861_4 (Length: 401)
Name: NF9861_4
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9861_4 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 390
Target Start/End: Complemental strand, 42142076 - 42141708
Alignment:
| Q |
21 |
agaatataagaaagtaagaaagaacacacaatatatcttcttatcacagttctcgaagctttaaagtcatgataattaataacaatggtttggctttaat |
120 |
Q |
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| T |
42142076 |
agaatataagaaagtaagaaagaacacacaatatatcttcttatcacagttctcgaagctttaaagtcatgataattaataacaatggtttggctttaat |
42141977 |
T |
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| Q |
121 |
atatgatcagagttctgtgaggtctataatatgtaaggcaaaaataggctttcctttttctgtacctatgctatataatttgcacaccctatacatgtgt |
220 |
Q |
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| T |
42141976 |
atatgatcagagttctgtgaggtctataatatgtaaggcaaaaataggctttcctttttctgtacctatgctatacaatttgcacaccctatacatgtgt |
42141877 |
T |
|
| Q |
221 |
ttgtcttactgaattttattacatactatactatagattactagattattaatatgagtaacta--gtgtttaatgtatagttggaattatgtagtagca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42141876 |
ttgtcttactgaattttattacatactatactat--acta-tagattattaatatgagtaactagtgtgtttaatgtatagttggaattatgtagtagca |
42141780 |
T |
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| Q |
319 |
ttagtcacaactttgggaggctattaaatattataggtagttgaagagaataattgaattttattagtataa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141779 |
ttagtcacaactttgggaggctattaaatattataggtagttgaagagaataattgaattttattagtataa |
42141708 |
T |
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