View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9861_low_1 (Length: 357)
Name: NF9861_low_1
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9861_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 3037658 - 3037826
Alignment:
| Q |
17 |
atagtgaaagccgtggccaatgggcttccattagactggcccacttagagacaatccaatccaactgtcacccgcgttcacgtgtcacatacgtggggat |
116 |
Q |
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| T |
3037658 |
atagtgaaagccgtggccaatgggcttccattagactggcccacttagagacaatccaatccaactgtcacccgcgttcacgtgtcacatacgtggggat |
3037757 |
T |
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| Q |
117 |
gttcttcatgcgacctcatcaataagctatataataaactccacacacactctcacttcctcagtagcca |
186 |
Q |
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| T |
3037758 |
gttcttcatgcgacctcatcaataagctatataataaactccacacacactctcacttcc-cagtagcca |
3037826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 219 - 351
Target Start/End: Original strand, 3037850 - 3037982
Alignment:
| Q |
219 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
318 |
Q |
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| T |
3037850 |
tcccaatctaaattcgaaaaatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaacagcttcatcaaaccgtacaagttc |
3037949 |
T |
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| Q |
319 |
ttcagaagtgattttggcacctgcaacaccaaa |
351 |
Q |
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| T |
3037950 |
ttcagaagtgattttggcacctgcaagaccaaa |
3037982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 3021015 - 3021072
Alignment:
| Q |
238 |
aatggatttcttcatgtcatcatttagtgattactcagacacttcttcatcagaaaca |
295 |
Q |
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| T |
3021015 |
aatggatttcttcatgtcatcttttggtgagtactcagacacttcttcttcagaaaca |
3021072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 3030287 - 3030327
Alignment:
| Q |
311 |
acaagttcttcagaagtgattttggcacctgcaacaccaaa |
351 |
Q |
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| T |
3030287 |
acaagttcttcagaagtgattttggcatctgcaagaccaaa |
3030327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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