View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9861_low_2 (Length: 314)

Name: NF9861_low_2
Description: NF9861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9861_low_2
NF9861_low_2
[»] chr8 (10 HSPs)
chr8 (53-306)||(40811745-40811998)
chr8 (64-184)||(40816925-40817054)
chr8 (54-186)||(40804938-40805070)
chr8 (221-303)||(40825638-40825720)
chr8 (61-103)||(40806685-40806727)
chr8 (233-303)||(40806828-40806898)
chr8 (233-283)||(40817084-40817134)
chr8 (230-281)||(40805096-40805147)
chr8 (7-37)||(40811702-40811732)
chr8 (53-115)||(40825447-40825509)
[»] scaffold0415 (2 HSPs)
scaffold0415 (64-184)||(15310-15439)
scaffold0415 (233-283)||(15230-15280)
[»] scaffold0559 (1 HSPs)
scaffold0559 (233-303)||(7733-7803)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 53 - 306
Target Start/End: Original strand, 40811745 - 40811998
Alignment:
Q  53 gatcctgatgaagctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40811745 gatcctgatgaagctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcaa 40811844  T
Q  153 aaagtttgcccaatcagggccttaaaatgaattgaattgtgcataaaaatctcttagtatgaaatataatctacatcaagccgcatatcaatccatagac 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40811845 aaagtttgcccaatcagggccttaaaatgaattgaattgtgcataaaaatctcttagtatgaaatataatctacatcaagccgcatatcaatccatatac 40811944  T
Q  253 cgttatcaaagccgtaataagggaatgatccacgccggtggccaaatccaacgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40811945 cgttatcaaagccgtaataagggaatgatccacgccggtggccaaatccaacgt 40811998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 40816925 - 40817054
Alignment:
Q  64 agctcatgatctttttatacaaactgagctaaacactagttgcaaaacttta---------caagacatcagacgatggaaaaagtgtagaaaagcgaaa 154  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||         |||||||||| ||||||||||||||||| ||||||||||    
T  40816925 agctcatgatctttttatataaactgagctaaacactagttactaaactttacaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaa 40817024  T
Q  155 agtttgcccaatcagggccttaaaatgaat 184  Q
    ||||| |  |||||| ||||| ||||||||    
T  40817025 agttttctgaatcagagccttcaaatgaat 40817054  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 40804938 - 40805070
Alignment:
Q  54 atcctgatgaagctcatgatctttttatacaaactga-gctaaacactagttgcaaaactttacaagacatcagacgatggaaaaagtgtagaaaagcga 152  Q
    |||| ||||||||||| |||||||||||||||||| | || |||||||| || |||||||| |||||||| || || |||||||||||||| ||||||||    
T  40804938 atcccgatgaagctcacgatctttttatacaaacttaagccaaacactaattacaaaactt-acaagacagcaaacaatggaaaaagtgtacaaaagcga 40805036  T
Q  153 aaagtttgcccaatcagggccttaaaatgaattg 186  Q
    |||||||    ||| |||||||| ||||||||||    
T  40805037 aaagtttttgaaataagggccttcaaatgaattg 40805070  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 40825638 - 40825720
Alignment:
Q  221 atctacatcaagccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgatccacgccggtggccaaatccaa 303  Q
    |||||||| |||||||||||||| ||||||||||| |||| |||  | |||||||||||||||||||| |  |||||||||||    
T  40825638 atctacattaagccgcatatcaaaccatagaccgtgatcagagcgattataagggaatgatccacgccagccgccaaatccaa 40825720  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 40806685 - 40806727
Alignment:
Q  61 tgaagctcatgatctttttatacaaactgagctaaacactagt 103  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  40806685 tgaagctcatgatctttttatgcaaactgagctaaatactagt 40806727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 40806828 - 40806898
Alignment:
Q  233 ccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgatccacgccggtggccaaatccaa 303  Q
    |||||||||||||| |||||||||||||||||| | ||||| |||||||||  ||| |  |||||||||||    
T  40806828 ccgcatatcaatccgtagaccgttatcaaagccattataagagaatgatccgtgccagccgccaaatccaa 40806898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 40817084 - 40817134
Alignment:
Q  233 ccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgatcc 283  Q
    |||||||||||||| |||||||| ||||||||| | |||||||||||||||    
T  40817084 ccgcatatcaatccgtagaccgtaatcaaagccattataagggaatgatcc 40817134  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 40805096 - 40805147
Alignment:
Q  230 aagccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgat 281  Q
    |||||||||||  ||||||||||||||||||||||| | ||||||| |||||    
T  40805096 aagccgcatattgatccatagaccgttatcaaagccattataagggcatgat 40805147  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Original strand, 40811702 - 40811732
Alignment:
Q  7 tctataattacagttcctgatgatgctcagt 37  Q
    |||||||||||||||||||||||||||||||    
T  40811702 tctataattacagttcctgatgatgctcagt 40811732  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 40825447 - 40825509
Alignment:
Q  53 gatcctgatgaagctcatgatctttttatacaaactgagctaaacactagttgcaaaacttta 115  Q
    |||| |||||||| |||||||||||||| ||||||||||| ||| |||| |  ||||||||||    
T  40825447 gatcttgatgaagttcatgatctttttacacaaactgagccaaatactaatcacaaaacttta 40825509  T

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Target: scaffold0415 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 15439 - 15310
Alignment:
Q  64 agctcatgatctttttatacaaactgagctaaacactagttgcaaaactttacaa---------gacatcagacgatggaaaaagtgtagaaaagcgaaa 154  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||         ||||||| ||||||||||||||||| ||||||||||    
T  15439 agctcatgatctttttatataaactgagctaaacactagttactaaactttacaaaatttacaagacatcaaacgatggaaaaagtgtacaaaagcgaaa 15340  T
Q  155 agtttgcccaatcagggccttaaaatgaat 184  Q
    ||||| |  |||||| ||||| ||||||||    
T  15339 agttttctgaatcagagccttcaaatgaat 15310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 15280 - 15230
Alignment:
Q  233 ccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgatcc 283  Q
    |||||||||||||| |||||||| ||||||||| | |||||||||||||||    
T  15280 ccgcatatcaatccgtagaccgtaatcaaagccattataagggaatgatcc 15230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 7803 - 7733
Alignment:
Q  233 ccgcatatcaatccatagaccgttatcaaagccgtaataagggaatgatccacgccggtggccaaatccaa 303  Q
    |||||||||||||| |||||||||||||||||| | ||||| |||||||||  ||| |  |||||||||||    
T  7803 ccgcatatcaatccgtagaccgttatcaaagccattataagagaatgatccgtgccagccgccaaatccaa 7733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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