View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9862_high_15 (Length: 237)
Name: NF9862_high_15
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9862_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4188599 - 4188820
Alignment:
| Q |
1 |
cacatgtctctctcatctttcccatacaataagcttccttctaatctttccgagccaaaaaattgattcaaccaacacctcttctgtttcacatggcatt |
100 |
Q |
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| T |
4188599 |
cacatgtctctctcatctttcccatacaataagcttccttctaatctgtccgagccaaaaaattgattcaaccaacacttcttctgttttacatggcatt |
4188698 |
T |
|
| Q |
101 |
taacaagaacaatatcaaaatccatgaacacttcaaagttgttccttcatcatcaagccaaactacaacaattcctttaactttcttcgacatattttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4188699 |
taacaagaacaatatcaaaatccatgaacacttcaaagttgttccttcatcatcaacccaaactacaacaattcctttcactttcttcgacatattttgg |
4188798 |
T |
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| Q |
201 |
ataaagttccatcctatagaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4188799 |
ataaagttccatcctatagaac |
4188820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 4241141 - 4241245
Alignment:
| Q |
117 |
aaaatccatgaacacttcaaagttgttccttcatcatcaagccaaactacaacaattcctttaactttcttcgacatattttggataaagttccatccta |
216 |
Q |
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||||| || |||||| |||||||||||||| ||||||||| |||||| || |||| || | ||||| ||||||||||||||| ||| ||||||||| | |
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| T |
4241141 |
aaaattcacgaacacatcaaagttgttcctccatcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggctaaggttccatccaa |
4241240 |
T |
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| Q |
217 |
tagaa |
221 |
Q |
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||||| |
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| T |
4241241 |
tagaa |
4241245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 4100922 - 4101013
Alignment:
| Q |
108 |
aacaatatcaaaatccatgaacacttcaaagttgttccttcatc---atcaagcc-aaactacaacaattcctttaactttcttcgacatat |
195 |
Q |
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| T |
4100922 |
aacaatatcaaaatccatgaacacttcaaagttgttgctccatcaatatcatgccaaaaccattacagttcctttcactttcttcgacatat |
4101013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 4191845 - 4191944
Alignment:
| Q |
108 |
aacaatatcaaaatccatgaacacttcaaagttgttccttc-atcatcaagccaaactacaacaattcctttaactttcttcgacatattttggataaag |
206 |
Q |
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||||||||||||| ||||||||| |||| ||||||||| | |||||||| ||||| |||||| | ||| | ||||||||||||||||| ||| ||||| |
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| T |
4191845 |
aacaatatcaaaactcatgaacacatcaatgttgttcctccaatcatcaacacaaacgacaacattccctctcactttcttcgacatattatggctaaag |
4191944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 4233353 - 4233450
Alignment:
| Q |
117 |
aaaatccatgaacacttcaaagttgttccttcatcatcaagccaaactacaacaattcctttaactttcttcgacatattttggataaagttccatcc |
214 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||| |||| ||||||| ||| | |||| ||| |||||||||||| ||| ||||||||| |
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| T |
4233353 |
aaaatccatgaacacaccaaagtttttcctccatcatcaactcaaaaaacaacaacccctcttacttactttgacatattttggctaaggttccatcc |
4233450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 4250393 - 4250478
Alignment:
| Q |
129 |
cacttcaaagttgttccttcatcatcaagccaaactacaacaattcctttaactttcttcgacatattttggataaagttccatcc |
214 |
Q |
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|||||||| ||||||||| ||||||||| |||| || |||| ||| | ||||||||||||||||||||| ||| ||||||||| |
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| T |
4250393 |
cacttcaaggttgttcctccatcatcaacaaaaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatcc |
4250478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 4195590 - 4195701
Alignment:
| Q |
103 |
acaagaacaatatcaaaatccatgaacacttcaaagttgttccttcatcatcaagccaaactacaacaattcctttaactttcttcgacatattttggat |
202 |
Q |
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|||||| ||| || ||||||||||||||| | |||||| |||| ||||||||| ||||| ||||||| ||| | |||| ||| |||||||||||| | |
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| T |
4195590 |
acaagagcaacattaaaatccatgaacacattaaagttactcctccatcatcaacccaaaaaacaacaacccctcttacttactttgacatattttggct |
4195689 |
T |
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| Q |
203 |
aaagttccatcc |
214 |
Q |
| |
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| ||||||||| |
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| T |
4195690 |
taggttccatcc |
4195701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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