View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9862_high_7 (Length: 391)
Name: NF9862_high_7
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9862_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 7095760 - 7095389
Alignment:
| Q |
1 |
tgccacatatttgttgcttggtgatgcagagtattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095760 |
tgccacatatttgttgcttggtgatgcagattattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcag |
7095661 |
T |
|
| Q |
101 |
accaagttcttggaaagatattttcctcagagtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095660 |
accaagttcttggaaagatattttcctcagagtgcaagaactaaattgggtgatgattttctgaagttacaacagggcaacatgacggtaggagcatatg |
7095561 |
T |
|
| Q |
201 |
cagcaaggtttgagacattgtccaggtacttcaagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095560 |
cagcaaggtttgagacattgtccaggtacttcaagttctttcgtcagactgtggattaggcctacatgtgccaccgattccaagaagggctcaaggatga |
7095461 |
T |
|
| Q |
301 |
aattcaagacatggtaatgccattgggaattcaacaattccatcctttggtagaaaagtgtagagaaataga |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7095460 |
aattcaagacatggtaatgccattgggaattcaacaattccatcctttggtagaaaaatgtagagaaataga |
7095389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 8376042 - 8376412
Alignment:
| Q |
1 |
tgccacatatttgttgcttggtgatgcagagtattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376042 |
tgccacacatttgttgcttggtgatgcagagtattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcag |
8376141 |
T |
|
| Q |
101 |
accaagttcttggaaagatattttcctcagagtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376142 |
accaagttcttggaaagatattttcctcagagtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatg |
8376241 |
T |
|
| Q |
201 |
cagcaaggtttgagacattgtccaggtacttcaagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatga |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376242 |
cagcaaggtttgagacactgtccaggtacttcaagttc-ttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatga |
8376340 |
T |
|
| Q |
301 |
aattcaagacatggtaatgccattgggaattcaacaattccatcctttggtagaaaagtgtagagaaataga |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376341 |
aattcaagacatggtaatgccattgggaattcaacaattccatcctttggtagaaaagtgtagagaaataga |
8376412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 15420639 - 15421010
Alignment:
| Q |
1 |
tgccacatatttgttgcttggtgatgcagagtattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcag |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
15420639 |
tgccacttatctgttgcttggtgatgcagagtattggtggaaaaatgccaaaagtatgttagagaatgctcaagaggaaatcacttgggaggtttttcaa |
15420738 |
T |
|
| Q |
101 |
accaagttcttggaaagatattttcctcagagtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatg |
200 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15420739 |
gccaagttcttggaaagatttttccctcagagtgcaagaactaaattgggtgatgattttctgaagttacgacagggcaacatgacggtaggagcatatg |
15420838 |
T |
|
| Q |
201 |
cagcaaggtttgagacattgtccaggtacttcaagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatga |
300 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
15420839 |
cagcaaggtttgagacgctatctaggtacttcaagttcttccgtcagaccgtggatgaagcctacatgtgccatcgattccaagaggggcttaaggatga |
15420938 |
T |
|
| Q |
301 |
aattcaagacatggtaatgccattgggaattcaacaattccatcctttggtagaaaagtgtagagaaataga |
372 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
15420939 |
aattcaagacatggtgatgcctttgggaattcaacaattccagcctttggttgaaaagtgcagagaaataga |
15421010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University