View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9862_low_1 (Length: 563)
Name: NF9862_low_1
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9862_low_1 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 6 - 563
Target Start/End: Original strand, 31044960 - 31045517
Alignment:
| Q |
6 |
agaatgaattgagaaaatactcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaactgacatgaactataa |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31044960 |
agaatgaattgagaaaatactcatgatactacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaactgacatgaactataa |
31045059 |
T |
|
| Q |
106 |
gcaaagagctcagataaagaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctcctaaag |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
31045060 |
gcaaagagctcagataaagaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctcctaaag |
31045159 |
T |
|
| Q |
206 |
cctcaccaaacgaagtttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaa |
305 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045160 |
cctcaccaaacgaagcttgcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaa |
31045259 |
T |
|
| Q |
306 |
catgttcatatagccctctctttctctaaaattccattgaattatgagtacatattctatccgtatccaattgtcacaacatacatttaatttaactcta |
405 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045260 |
catgttcatataaccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaactcta |
31045359 |
T |
|
| Q |
406 |
gacttctacaacttcatctatcctctccgcacacttctacaacttcatttgttctctccacactctaaaatatatggattggaacacacttctacagttt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
31045360 |
gacttctacaacttcatctatcctctccgcacacttctacaacttcatttgttctctccacactataaaatttatggattggaacacgcttctacagttt |
31045459 |
T |
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| Q |
506 |
attaggattactgcaaaagatatgaattgctaccagcaaaggaatacaacagaggacc |
563 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045460 |
atcaggattactgcaaaagatatgaattgctaccagcaaaggaatacaacagaggacc |
31045517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 172427 - 172005
Alignment:
| Q |
9 |
atgaattgagaaaatactcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaa---ctgacatgaactataa |
105 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| || | |||||||||| ||||| |
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| T |
172427 |
atgaattaagaaaatactcatgatattacaaatcctaaggtaagagtacgaaacctactcgttttgctctcaaaataaatattactgacatgaattataa |
172328 |
T |
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| Q |
106 |
gcaaagagctcagataaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaaa-gttgctctt |
196 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || |||||||| ||||||||| |
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| T |
172327 |
gcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaaatgttgctctt |
172228 |
T |
|
| Q |
197 |
ctcctaaagcctcaccaaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaat |
290 |
Q |
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||| ||||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
172227 |
ctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaat |
172129 |
T |
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| Q |
291 |
ttaaactcatgcaaacatgttcatatagccctctctttctctaaaattccattgaattatgagtacatattctatccgtatccaattgtcaca-acatac |
389 |
Q |
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| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |||| | |
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| T |
172128 |
tcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgtcacacacattc |
172029 |
T |
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| Q |
390 |
atttaatttaactctagacttcta |
413 |
Q |
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|||||||| ||||||| ||||||| |
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| T |
172028 |
atttaattaaactctacacttcta |
172005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 18370 - 18287
Alignment:
| Q |
6 |
agaatgaattgagaaaatactcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaa |
89 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
18370 |
agaatgaattgagaaaatactcatgatattgcaaaccctttggttagagtacgaaacctactcgttttgctttcaaaatcaaaa |
18287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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