View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9862_low_12 (Length: 260)

Name: NF9862_low_12
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9862_low_12
NF9862_low_12
[»] chr5 (2 HSPs)
chr5 (19-250)||(28273978-28274209)
chr5 (19-250)||(28270739-28270969)
[»] chr8 (2 HSPs)
chr8 (132-224)||(44728845-44728934)
chr8 (134-238)||(12729141-12729243)
[»] chr7 (2 HSPs)
chr7 (134-238)||(20462435-20462539)
chr7 (132-213)||(23757389-23757470)
[»] chr1 (2 HSPs)
chr1 (151-226)||(42263730-42263805)
chr1 (160-238)||(49053555-49053631)
[»] chr3 (2 HSPs)
chr3 (134-238)||(52653524-52653626)
chr3 (132-236)||(16929783-16929890)
[»] chr4 (2 HSPs)
chr4 (188-238)||(19226770-19226820)
chr4 (143-238)||(122829-122922)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 28273978 - 28274209
Alignment:
Q  19 atgttctatgtctctttttgaatgnnnnnnngcttccaaagtatctctatttataaagaaaacttatgctctatattgaagagatacaactctttggaag 118  Q
    |||||||||||||||||| |||||       || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  28273978 atgttctatgtctcttttcgaatgtttttttgcgtccaaagtatctctatttatagagaaaacttatgttctatattgaagagatacaactctttggaag 28274077  T
Q  119 agattttgtgatgacaatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  28274078 agattttgtgatgacaatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttata 28274177  T
Q  219 ttttggaagtttctctcacactatcacctttg 250  Q
    ||||||||||||||||||||||||||||||||    
T  28274178 ttttggaagtttctctcacactatcacctttg 28274209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 28270739 - 28270969
Alignment:
Q  19 atgttctatgtctctttttgaatgnnnnnnngcttccaaagtatctctatttataaagaaaacttatgctctatattgaagagatacaactctttggaag 118  Q
    |||||||||||||||||| ||||        || ||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||    
T  28270739 atgttctatgtctcttttggaatttttttatgcgtccaaagtatctctatttatagagaaa-cttatgttctacattgaagagatacaactctttggaag 28270837  T
Q  119 agattttgtgatgacaatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttata 218  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  28270838 agattctgtgacgacaatggttacattgtttcaatagtcaagcaatacatcatttcactgaaaggttcatattcaatcattgcaacttttcaaatttata 28270937  T
Q  219 ttttggaagtttctctcacactatcacctttg 250  Q
    ||||||||||||||||||||||||||||||||    
T  28270938 ttttggaagtttctctcacactatcacctttg 28270969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 44728934 - 44728845
Alignment:
Q  132 acaatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttgg 224  Q
    |||||| |||||||| ||||||| | |||||||||||| ||||||| ||||  || |||||||| ||||||||||| ||||||||||||||||    
T  44728934 acaatgattacattgcttcaatatttaagcaatacatcctttcactaaaag--tc-tattcaaccattgcaacttttcaaatttatattttgg 44728845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 12729243 - 12729141
Alignment:
Q  134 aatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaagtttctc 233  Q
    |||||||| |||| |||||| ||| |||| |||| | |||| || ||||||   |||| ||| ||||||||||||||||  |||||||||||| ||||||    
T  12729243 aatggttatattgcttcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaactttccaaa--tatattttggaaatttctc 12729146  T
Q  234 tcaca 238  Q
    |||||    
T  12729145 tcaca 12729141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 20462539 - 20462435
Alignment:
Q  134 aatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaagtttctc 233  Q
    ||||||||||||| | ||||||||||||| | |||| ||||||| ||||||   ||||||| ||||   ||||| ||||||||| |||||||| ||||||    
T  20462539 aatggttacattggtccaatagtcaagcattgcatcttttcacttaaaggtctttattcaaatattcatacttttcaaatttattttttggaaatttctc 20462440  T
Q  234 tcaca 238  Q
    |||||    
T  20462439 tcaca 20462435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 23757389 - 23757470
Alignment:
Q  132 acaatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaat 213  Q
    ||||||||||||||| ||||| | ||||||| |||||| ||||||||||||||    ||||||| | |||||||||| ||||    
T  23757389 acaatggttacattgcttcaagaatcaagcattacatcctttcactgaaaggtctccattcaaccaatgcaactttcaaaat 23757470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 42263730 - 42263805
Alignment:
Q  151 aatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaa 226  Q
    ||||||||||||||||||| ||||||| ||| ||   |||||||  ||||||||||| ||||||||||||||||||    
T  42263730 aatagtcaagcaatacatcttttcacttaaatgtctctattcaatcattgcaacttttcaaatttatattttggaa 42263805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 49053631 - 49053555
Alignment:
Q  160 gcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaagtttctctcaca 238  Q
    |||||||| | ||||||| ||||||   |||| ||| ||||||||||||||||  |||||||||||| |||||||||||    
T  49053631 gcaatacaccttttcactaaaaggtctttatttaaccattgcaactttccaaa--tatattttggaaatttctctcaca 49053555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 52653626 - 52653524
Alignment:
Q  134 aatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaagtttctc 233  Q
    |||||||||||||  ||||| ||||| ||||||| | ||||||| ||||||   |||| ||  ||||||||||||||||  |||||||||||| ||||||    
T  52653626 aatggttacattgcatcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaa--tatattttggaaatttctc 52653529  T
Q  234 tcaca 238  Q
    |||||    
T  52653528 tcaca 52653524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 16929783 - 16929890
Alignment:
Q  132 acaatggttacattgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaat---ttatattttggaagt 228  Q
    ||||||| |||||||||| |||||||||| | |||||| |||   ||||||||   || ||||  |||||||||||||||||   ||||||||||||| |    
T  16929783 acaatggctacattgttttaatagtcaagtattacatcttttttatgaaaggtctctactcaatcattgcaactttccaaatttattatattttggaaat 16929882  T
Q  229 ttctctca 236  Q
    ||||||||    
T  16929883 ttctctca 16929890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 19226770 - 19226820
Alignment:
Q  188 tattcaactattgcaactttccaaatttatattttggaagtttctctcaca 238  Q
    |||| ||| ||||||||||||||||| |||||||||||| |||||||||||    
T  19226770 tatttaaccattgcaactttccaaatatatattttggaaatttctctcaca 19226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  143 attgtttcaatagtcaagcaatacatcgtttcactgaaaggttcatattcaactattgcaactttccaaatttatattttggaagtttctctcaca 238  Q
    ||||||||||| |||||||||||||   |||| || ||| |||  |||| ||||||||||||||| ||||  |||| ||||||| |||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaa--tatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University