View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9862_low_14 (Length: 252)
Name: NF9862_low_14
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9862_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 16481729 - 16481493
Alignment:
| Q |
19 |
gggaagaacaaaagaaagatttcttttcaacaaa---ttgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatg |
115 |
Q |
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| T |
16481729 |
gggaagaacaaaagaaagatttcttttcaacaaacaattgatgttggcaacaatattataacgaatggtagacatatgtatcctcattcagattattatg |
16481630 |
T |
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| Q |
116 |
aacttggcggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaag |
215 |
Q |
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| T |
16481629 |
aacttggcggagatgaattcaagaggtttattcagcataagacgggaaataaatcaaatgtattaaggccatcagttccggttcaggtttcggctccaag |
16481530 |
T |
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| Q |
216 |
atctccttcacaagcgctatacaatgcacttccagca |
252 |
Q |
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| T |
16481529 |
acctccttcacaagcgctatacaatgcacttccagca |
16481493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 17631058 - 17631288
Alignment:
| Q |
20 |
ggaagaacaaaagaaagatttcttttcaacaaattgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatgaact |
119 |
Q |
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| T |
17631058 |
ggaagaacaaaagaaagatttcctttcaacaaacatctgatggaaacgatattatacctaacggtaaatatctctatcctcattcagatcattatgaggt |
17631157 |
T |
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| Q |
120 |
tggcggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaagatct |
219 |
Q |
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| T |
17631158 |
tcacgaagatgaattcaagagttttgttcagcacattacgggaaataaatcaaatgcattaaggccaccagatccagttcaggtttcggctccaacccct |
17631257 |
T |
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| Q |
220 |
ccttcacaagcgctatacaatgcacttccag |
250 |
Q |
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| T |
17631258 |
ccctcacaggcgcaatacaatgcaattccag |
17631288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 17604478 - 17604705
Alignment:
| Q |
26 |
acaaaagaaagatttcttttcaacaaa---ttgatgttggcaacaatattataactaatggtagacatatgtatcctcattcagattattatgaacttgg |
122 |
Q |
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| T |
17604478 |
acaaaagaaatatttcttttcagcaaacaattgattttgaaaacaatattatatctagcggtagacatctatatccttattcagatttttacgtggttca |
17604577 |
T |
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| Q |
123 |
cggagatgaattcaagaggtttattcagcataagacgggaaatgaatcaaatgtattaaggccatccgttccggttcaggtttcggctccaagatctcct |
222 |
Q |
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| T |
17604578 |
cgaagatgaattcaagagttttgttcagcatattacgggaaagaaatcaaatgtagtaagaccaccaattcctattcatgttttggctccagtacctcct |
17604677 |
T |
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| Q |
223 |
tcacaagcgctatacaatgcacttccag |
250 |
Q |
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| T |
17604678 |
tcacaggctctatacaatgcacttccag |
17604705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 18766171 - 18766259
Alignment:
| Q |
19 |
gggaagaacaaaagaaagatttcttttcaaca---aattgatgttggcaacaatattataactaatggtagacatatgtatcctcattc |
104 |
Q |
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| T |
18766171 |
gggaagaacacaggagagaattcttttcaacacaaaattgattttgacaatgatattataactattggtagacatatatatccttattc |
18766259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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