View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9862_low_16 (Length: 238)

Name: NF9862_low_16
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9862_low_16
NF9862_low_16
[»] chr3 (9 HSPs)
chr3 (1-221)||(2809145-2809365)
chr3 (7-223)||(2761098-2761314)
chr3 (5-223)||(2820442-2820660)
chr3 (78-154)||(2771015-2771091)
chr3 (76-208)||(2750948-2751080)
chr3 (78-127)||(2799316-2799365)
chr3 (78-119)||(2792269-2792310)
chr3 (76-201)||(5414838-5414963)
chr3 (8-56)||(2836808-2836856)
[»] scaffold0691 (1 HSPs)
scaffold0691 (16-151)||(4262-4397)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2809145 - 2809365
Alignment:
Q  1 tctcagttgaaaaatgatccattacagtcactgaaaaacttgccatatttgttgaaattcggtctatgggacaacgcctatgatggtgaaattttacatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2809145 tctcagttgaaaaatgatccattacagtcactgaaaaacttgccatatttgttgaaattcggtctatgggacaacgcctatgatggtgaaattttacatt 2809244  T
Q  101 ttcagaatggcgggtttctaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatagatgaaggaactttgatctctcttga 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2809245 ttcagaatggcgggtttttaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatagacgaaggaactttgatctctcttga 2809344  T
Q  201 atatcttactatggacagaat 221  Q
    ||||||||| |||||||||||    
T  2809345 atatcttaccatggacagaat 2809365  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 2761098 - 2761314
Alignment:
Q  7 ttgaaaaatgatccattacagtcactgaaaaacttgccatatttgttgaaattcggtctatgggacaacgcctatgatggtgaaattttacattttcaga 106  Q
    ||||||||||||||| | |||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |    
T  2761098 ttgaaaaatgatccactgcagtcacttaaaaacttgccaaatctgttgaagttcggtctatgggacaacgcctatgatggtgaaattttgcattttcaaa 2761197  T
Q  107 atggcgggtttctaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatagatgaaggaactttgatctctcttgaatatct 206  Q
     ||| ||||||||||| |||| || |||  | ||||| ||||||||||| ||| || || |||||||||| |||||||||||||||||||||||||||||    
T  2761198 ttggagggtttctaaagttgaagagactgaacctcaggcgcttgaatagggtaaattctatccttatagacgaaggaactttgatctctcttgaatatct 2761297  T
Q  207 tactatggacagaatcc 223  Q
     |  |||||||||||||    
T  2761298 gaacatggacagaatcc 2761314  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 2820442 - 2820660
Alignment:
Q  5 agttgaaaaatgatccattacagtcactgaaaaacttgccatatttgttgaaattcggtctatgggacaacgcctatgatggtgaaattttacattttca 104  Q
    ||||||||||||||||| | || || ||||||||||||||  |  || |||| || |||||||||||| | ||||| |||||||||||||| |||||||     
T  2820442 agttgaaaaatgatccactgcaatctctgaaaaacttgccgaacctgctgaagtttggtctatgggacgatgcctacgatggtgaaattttgcattttcg 2820541  T
Q  105 gaatggcgggtttctaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatagatgaaggaactttgatctctcttgaatat 204  Q
     | ||| |||||||||||||||| || |||  | ||||||||||||||||||||| |   | ||  |||||| |||||||||||||||||||||||||||    
T  2820542 aattggagggtttctaaaattgaagagactgaacctcagtcgcttgaatagagtaaagtatatctgtatagacgaaggaactttgatctctcttgaatat 2820641  T
Q  205 cttactatggacagaatcc 223  Q
    ||||| ||| |||||||||    
T  2820642 cttaccatgaacagaatcc 2820660  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 2771015 - 2771091
Alignment:
Q  78 ctatgatggtgaaattttacattttcagaatggcgggtttctaaaattgaggaaactagatctcagtcgcttgaata 154  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||||| || |||  ||||| || |||||||||    
T  2771015 ctatgatggtgaaatttttcattttcaaaatggagggtttctaaaattgatgacactgaatctccgttgcttgaata 2771091  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 2750948 - 2751080
Alignment:
Q  76 gcctatgatggtgaaattttacattttcagaatggcgggtttctaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatag 175  Q
    |||| ||||||||||||||| |||||||| ||||| || |||| || |||||   ||||   |||||||| ||||||||||  | || || |||||||||    
T  2750948 gcctttgatggtgaaattttgcattttcaaaatggaggatttcaaatattgaaagaactgattctcagtcacttgaatagaccaaattctatccttatag 2751047  T
Q  176 atgaaggaactttgatctctcttgaatatctta 208  Q
    |  ||||| ||||| ||||||||||| ||||||    
T  2751048 agaaaggagctttgctctctcttgaaaatctta 2751080  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 2799316 - 2799365
Alignment:
Q  78 ctatgatggtgaaattttacattttcagaatggcgggtttctaaaattga 127  Q
    |||||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  2799316 ctatgatggtgaaatttttcattttcgaaatggagggtttctaaaattga 2799365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 2792269 - 2792310
Alignment:
Q  78 ctatgatggtgaaattttacattttcagaatggcgggtttct 119  Q
    |||||||||||||||||| |||||||| ||||| ||||||||    
T  2792269 ctatgatggtgaaatttttcattttcaaaatggagggtttct 2792310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 5414838 - 5414963
Alignment:
Q  76 gcctatgatggtgaaattttacattttcagaatggcgggtttctaaaattgaggaaactagatctcagtcgcttgaatagagtacatactgtccttatag 175  Q
    ||||||||||||||| |||| |||||||| ||||| || |||   |||||||   |||||  ||||||||   ||||| ||||| || || |||||||||    
T  5414838 gcctatgatggtgaatttttgcattttcaaaatggaggatttaagaaattgaaagaactatttctcagtcatatgaatcgagtaaattctatccttatag 5414937  T
Q  176 atgaaggaactttgatctctcttgaa 201  Q
    |  ||||| ||||| |||||||||||    
T  5414938 agaaaggagctttgctctctcttgaa 5414963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 2836856 - 2836808
Alignment:
Q  8 tgaaaaatgatccattacagtcactgaaaaacttgccatatttgttgaa 56  Q
    ||||| |||||||| | ||||||||||||||||||||| ||||| ||||    
T  2836856 tgaaagatgatccaatgcagtcactgaaaaacttgccaaatttgctgaa 2836808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 4397 - 4262
Alignment:
Q  16 gatccattacagtcactgaaaaacttgccatatttgttgaaattcggtctatgggacaacgcctatgatggtgaaattttacattttcagaatggcgggt 115  Q
    |||||| | ||||||||||||||||||||| || |||||||  ||  | | |||||||| ||||||||||| ||| |||| |||||||| | ||| || |    
T  4397 gatccaatgcagtcactgaaaaacttgccaaatctgttgaagctctctttgtgggacaatgcctatgatggcgaagttttgcattttcaaagtggaggat 4298  T
Q  116 ttctaaaattgaggaaactagatctcagtcgcttga 151  Q
    ||  |||||||| || |||  |||| ||||||||||    
T  4297 ttaaaaaattgatgacactgaatcttagtcgcttga 4262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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