View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9862_low_21 (Length: 223)

Name: NF9862_low_21
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9862_low_21
NF9862_low_21
[»] chr4 (10 HSPs)
chr4 (20-210)||(30264258-30264448)
chr4 (20-210)||(30287740-30287930)
chr4 (20-202)||(30271160-30271342)
chr4 (20-202)||(30280847-30281029)
chr4 (20-202)||(30304227-30304409)
chr4 (20-119)||(30032301-30032400)
chr4 (20-119)||(30048547-30048646)
chr4 (20-119)||(30062888-30062987)
chr4 (20-119)||(30220279-30220378)
chr4 (20-119)||(30228686-30228785)
[»] chr7 (2 HSPs)
chr7 (20-119)||(2311389-2311488)
chr7 (20-118)||(29483193-29483291)
[»] scaffold0024 (2 HSPs)
scaffold0024 (20-106)||(79534-79620)
scaffold0024 (20-70)||(72506-72556)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 30264448 - 30264258
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264448 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30264349  T
Q  120 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264348 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 30264258  T

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Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 30287740 - 30287930
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287740 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 30287839  T
Q  120 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287840 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattcaatctctg 30287930  T

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Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30271342 - 30271160
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  30271342 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttcct 30271243  T
Q  120 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 202  Q
       |||||  |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  30271242 tcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttttcaattc 30271160  T

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Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 30280847 - 30281029
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  30280847 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagctgatgacccttctcttcctttgtcttttcct 30280946  T
Q  120 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 202  Q
       |||||  |||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  30280947 tcacgcaaaccatcacaattgttatctcccaagaaaggttttttcaagtggtttccttcaaccatattctcctttttcaattc 30281029  T

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Target: chr4; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 30304409 - 30304227
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  30304409 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtctacaaagagttgatgacccttctcttcctttgtcttttcct 30304310  T
Q  120 aaccgcaagtcatcacaattgttaactcccaagagaggctttttcaagtggttcccttcaaccatattctcccttttcaattc 202  Q
       |||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||    
T  30304309 tcacgcaaaccatcacaattgttatctcccaagaaaggctttttcaagtggttcccttcaaccatattcccctttttcaattc 30304227  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 30032400 - 30032301
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  30032400 caaacttcatcatgcacttggtgacggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctttatcttttcct 30032301  T

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Target: chr4; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 30048646 - 30048547
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30048646 caaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30048547  T

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Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 30062987 - 30062888
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30062987 caaacttcatcatggacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30062888  T

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Target: chr4; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 30220279 - 30220378
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30220279 caaacttcaccatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30220378  T

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Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 30228785 - 30228686
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  30228785 caaacttaatcatgcacttggtgatggttactctctcatgagtgctcttctttcttgtcttcaaagagctgatgatccttctcttcctctatcttttcct 30228686  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 2311389 - 2311488
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcct 119  Q
    ||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||  | ||||||||||| |||||||||||||||||||||    
T  2311389 caaacttcaccatgcacttggagatggttattctctaatgggtgcacttctttcttgtctacaacgtgctgatgatccatctcttcctttgtcttttcct 2311488  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 29483291 - 29483193
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcctttgtcttttcc 118  Q
    |||| |||| |||||| |||| ||||| |||  |||||||||||   |||||||  | ||||| |||||||||||||||||||| | |||||| |||||    
T  29483291 caaatttcaccatgcaattggagatggctacaatctcatgggtgtcattctttcgagccttcaaagagctgatgatccttctctccgtttgtcctttcc 29483193  T

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Target: scaffold0024 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 79620 - 79534
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttctttcttgtcttcatagagctgatgatccttctcttcc 106  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||| |  | ||||||||| | |||||||||||    
T  79620 caaacttcatcatgcacttggagatggttactctctaatgggtgcacttctttcatgtttagaaagagctgataacccttctcttcc 79534  T

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Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 72556 - 72506
Alignment:
Q  20 caaacttcatcatgcacttggtgatggttactctctcatgggtgctcttct 70  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  72556 caaacttcatcatgcacttggagatggttactctctaatgggagctcttct 72506  T

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