View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9862_low_6 (Length: 409)
Name: NF9862_low_6
Description: NF9862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9862_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 4223791 - 4224188
Alignment:
| Q |
1 |
aaaacaagctagtgtaaaaaagagtactaatattctcattctcattgatcatatattatggcaaaaatcataaatgtttcatttgttctagttctccttg |
100 |
Q |
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| T |
4223791 |
aaaacaagctagtgtaaaaa-gagtgctaatattctcatt-------attatatactatggcaaaaatcatcaatttttcatttgttctagttctcctta |
4223882 |
T |
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| Q |
101 |
ttggtgtgacaattatgaatggttacaatgttgaaggtggaggaagaggtagttaccaaatggagaaagatgattctattaacaattctcaaaagacgat |
200 |
Q |
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| T |
4223883 |
ttagtgtgacaattatgaatggttacaatgttgaaggtggaggaagaggtagttaccaaatggagaaagatgattctatttacaattctcaaaaaacaat |
4223982 |
T |
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| Q |
201 |
tccga------ttttagattgtgtgattttgttcaaattgtgcttttttgttactcctaccttttgtcctcagtactataagatgtgcacaattccaaac |
294 |
Q |
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| T |
4223983 |
tccgaatccgattatagattgtgtgattttgtttaaattgtgttattttgttagtcctaccttttgtgctcagtactataagatgtgcacaattccaaac |
4224082 |
T |
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| Q |
295 |
cacccacccacctcagctcaaagtcttccatgatgatcagagattaatgtggccatgcattgtttgtttgttatattatacctatatctatccgtatcat |
394 |
Q |
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| T |
4224083 |
cccccacccacctcagctcaaagtcttccatgatgatcagagattaatgtggccatgcatggtttgtgtgttatattatatctatatctatacgtatcat |
4224182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 4220012 - 4220098
Alignment:
| Q |
38 |
attctcattgatcatatattat----ggcaaaaatcataaatgtttcatttgttctagttctccttgttggtgtgacaattatgaat |
120 |
Q |
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| T |
4220012 |
attctcattgatcatatactatatatgacaaaaatcatcagtgtttcatttgttctagttcttcttgttattgttacaattatgaat |
4220098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 41814513 - 41814450
Alignment:
| Q |
40 |
tctcattgatcatatattatggcaaaaatcataaatgtttcatttgttctagttctccttgttg |
103 |
Q |
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| T |
41814513 |
tctcattgatcatatactatggcaaaaatcatcactacttcattgattttagttctccttgttg |
41814450 |
T |
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