View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_1 (Length: 949)
Name: NF9863_high_1
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 26642718 - 26642172
Alignment:
| Q |
1 |
attaattcccatgcctttatcat--gtcatactaagaaagaagttaattatatgagaatgaaatgtttgtgttcaggtaattgctggaattgatgtcgca |
98 |
Q |
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| T |
26642718 |
attaatttctatgcctttatcatatgtcatacttataaagaagttaatcatatgagaaagaaatgt--gtgttcaggtaattgctggaattgatgtggca |
26642621 |
T |
|
| Q |
99 |
gtgagatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatcccgcctaatgtaagaa |
198 |
Q |
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| T |
26642620 |
gtgcgatcaatgaaagtcggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatcccacctaatgtaagaa |
26642521 |
T |
|
| Q |
199 |
tccttttatgatccagaattatctagtaacgtttgattttatgcatatatacagtatacattacctaaattgataggttttttcatcacaaacacatgcg |
298 |
Q |
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| T |
26642520 |
tccttttatgatccagaattacctagtaacgtttgattttatgcatatatacaatatacattatctaaattgataggttttttcatcacaaacacacgcg |
26642421 |
T |
|
| Q |
299 |
cgcgcacatatatatattctctagttggagctaattatatacgtttgattgacgactatagtactaatttttaatgtcttctttcaaataaaataaaaaa |
398 |
Q |
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| T |
26642420 |
cgcgcac--acatatattctctagttggagctaattatatacgtttgattgaccactacagtactaatttttattgtattcttt----taaaa-aaaaaa |
26642328 |
T |
|
| Q |
399 |
gttctttgacaggcagaggctgttcactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaa |
498 |
Q |
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| T |
26642327 |
gttctttgacaggcagaggctgttcactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaa |
26642228 |
T |
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| Q |
499 |
ctggttggcctgaggcatcagtgaattcagaatgatccagccatctacaaaacaaa |
554 |
Q |
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| T |
26642227 |
ctggttggcttgaggcatcagtgaattcagaatgatccagcaatctagtaaacaaa |
26642172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 561 - 944
Target Start/End: Complemental strand, 26642141 - 26641760
Alignment:
| Q |
561 |
atatagtgtaactgtacatgtaccagcatttattgatttgtgaattgcaggatagtattaatgaaatttatatttaaggaacccaggtagtatattgctc |
660 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26642141 |
atatagtgtaactgtacatgtaccagcatttataaatttgtgaattgcagaatagtattaatgaaatttatatttaaggaacccaggtagtatattgctt |
26642042 |
T |
|
| Q |
661 |
gatttttggactatcatatggttttgctctagaaaccaattcaatgaaatggtacactggtgactggtttaccttttccgaagcacgaatgtttaactcc |
760 |
Q |
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|||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26642041 |
gatttttggact--catatggctttgctttagaaaccaattcaatgaaatggtacactggtgactggtttaccttttccgaaacacgaatgtttaactcc |
26641944 |
T |
|
| Q |
761 |
acatggatctaatttcaacagtttcctaagtctgaactctaaacatcctaagtcaccgctccattcatcttcaacacgacggcaacctgctcctcaccat |
860 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26641943 |
acatggatctaatttcaaccgtttcctaagtctgaactctaaacatcctaagtcaccgctccattcatcttcaacacgacggcaacctgctccccaccat |
26641844 |
T |
|
| Q |
861 |
ttatcttcgccgtctctggcggtgccaaactgtttgctacccttcatcttcatcattcatctgcatccttgtctctgcttctcc |
944 |
Q |
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||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26641843 |
ttaccttcgtcgtctctggcggtgccaaactgttcgctacccttcatcttcatcattcatctgcatccttgtctctgattctcc |
26641760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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