View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_11 (Length: 426)
Name: NF9863_high_11
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Complemental strand, 35005083 - 35004674
Alignment:
| Q |
5 |
gagaagcagagagaatatatagcctaatattccgctctcatgaaatatagaataaccatttaactatacaaaagcctcaccaaagacaaaaggtagaaaa |
104 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35005083 |
gagaaacaaagagaatatatagcctaatattccgctctcatgaaatatagaataaccatttaactatacaaaagcctcaccaaagacaaaaggtagaaaa |
35004984 |
T |
|
| Q |
105 |
acaaaagtccttccaattaaccccacccacttgaacctatggttaannnnnnngtttctcattacctcttcttcattcatcaaccttaattcaaatctct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004983 |
acaaaagtccttccaattaaccccacccacttgaacctatggttaatttttttgtttctcattacctcttcttcattcatcaaccttaattcaaatctct |
35004884 |
T |
|
| Q |
205 |
ctaataaccttatttaaaaatttaat---tatttctcttttgtcaagcctggctaattcttatttcattgaatgttcatggcaccaaggaggggcctatt |
301 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004883 |
ctaataacctcatttaaaaatttaataattatttctcttttgtcaagcctggctaattcttatttcattgaatgttcatggcaccaaggaggggcctatt |
35004784 |
T |
|
| Q |
302 |
ggatggaggagaggaccgttatggattaatgtcttttggcaccaaagacattttcactatgcgacgtaaaataagatattggcaaaaacaattcaagcaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004783 |
ggatggaggagaggaccgttatggattaatgtcttttggcaccaaagacattttcactatgcgacgtaaaataagatattggcaaaaacaattcaagcaa |
35004684 |
T |
|
| Q |
402 |
cgacatttat |
411 |
Q |
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|||||||||| |
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| T |
35004683 |
cgacatttat |
35004674 |
T |
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