View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_2 (Length: 732)
Name: NF9863_high_2
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 505
Target Start/End: Complemental strand, 46922461 - 46921971
Alignment:
| Q |
15 |
cacagacaattaccttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactaga |
114 |
Q |
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| T |
46922461 |
cacagacaattaccttaacgctgagagaatagaagacaaattcatcagctgtagtgacattaaggtgcaagattgtgagacacaatccatgcaaactaga |
46922362 |
T |
|
| Q |
115 |
aaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaatattgcgagat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46922361 |
aaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtaacttcaatatcagcaatattgcgagat |
46922262 |
T |
|
| Q |
215 |
tgaacctcaccacccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttat |
314 |
Q |
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| T |
46922261 |
tgaacctcaccacccatttttgtctcagaactctcacacacaccgtcacttgttgagtattgtggaaaggtaaaaaattcagaaaagggcttgtttttat |
46922162 |
T |
|
| Q |
315 |
tttcaacaatagtatcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922161 |
tttcaacaatagtatcaaatttaccctccttttgtttttgtacaccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaat |
46922062 |
T |
|
| Q |
415 |
aattgatgcttgatcaccctgcaaaattcatcaatcaaaacacaaaagtaaaaatgtgatcctaaccgcaatttaaaactaaatatttttc |
505 |
Q |
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| T |
46922061 |
aattgatgcttgatcaccctgcaaaattcatcaatcaaaacacaaaagtaaaaatgtgatcctaacagcaatttaaaactaaatatttttc |
46921971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 513 - 715
Target Start/End: Complemental strand, 46921945 - 46921749
Alignment:
| Q |
513 |
ctatagaagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatg |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921945 |
ctatagaagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatg |
46921846 |
T |
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| Q |
613 |
tgagtcattctctgattctcaatttcttccttattcttacttgttttgactctgcgtttcttggaacgagaacgagaacgagttgaaattgaactatcta |
712 |
Q |
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| T |
46921845 |
tgagtcattctctgattctcaatttcttccttattcttacttgttttgactctgcgtttcttggaacgagaa------cgagttgaaattgaactatcta |
46921752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 519 - 641
Target Start/End: Original strand, 36676386 - 36676508
Alignment:
| Q |
519 |
aagtaccctttggacgtaggattcaggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtc |
618 |
Q |
| |
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|||||||||||||| || || || ||||| ||||| | ||||| ||| |||||||||||||| |||||||| || || || || ||||||||||||||| |
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| T |
36676386 |
aagtaccctttggatgtgagaatctggcattagagagcgaagaatagaaagatactcattcatctgctttcttctattacgctcaacagcaatgtgagtc |
36676485 |
T |
|
| Q |
619 |
attctctgattctcaatttcttc |
641 |
Q |
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| T |
36676486 |
attctctgattctcaatttcttc |
36676508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 36675815 - 36675915
Alignment:
| Q |
104 |
tgcaaactagaaaccatcttcaagagctgttttggtcttttctttgttcttattttgagatttgcatggctttcaaccattgtcacttcaatatcagcaa |
203 |
Q |
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||||||| ||| || || ||||||||||| ||||| || || ||| ||||||||| |||||||||||| |||| |||||||||||||| || ||||||| |
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| T |
36675815 |
tgcaaaccagatacaattttcaagagctgctttggcctctttcttgatcttattttaagatttgcatggttttccaccattgtcacttctatgtcagcaa |
36675914 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
|
| |
|
|
| T |
36675915 |
t |
36675915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 36676080 - 36676160
Alignment:
| Q |
357 |
caccaagaaattgtagcttctgctcaagcttcttaacaaagttaatagcacccccaataattgatgcttgatcaccctgca |
437 |
Q |
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|||||||||| || | ||| |||||||||| ||||||||||||||||| || ||||| || || |||||||||||||||| |
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| T |
36676080 |
caccaagaaaatgaaacttgtgctcaagctctttaacaaagttaatagctcctccaattatagaagcttgatcaccctgca |
36676160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 544 - 651
Target Start/End: Original strand, 8873295 - 8873402
Alignment:
| Q |
544 |
ggcatgagagatctaagaacagagagatactcattcatttgctttctcctgttgcgttctacagcaatgtgagtcattctctgattctcaatttcttcct |
643 |
Q |
| |
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||||||||||| ||||||||| ||||| ||||||||||| |||||| || ||||| ||||||||||| |||||||| |||||||||| ||||||| |
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| T |
8873295 |
ggcatgagagacctaagaacactgagatgatcattcatttggcgtctcctattacgttcaacagcaatgtgtgtcattctttgattctcaacatcttcct |
8873394 |
T |
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| Q |
644 |
tattctta |
651 |
Q |
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|||||||| |
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| T |
8873395 |
tattctta |
8873402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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