View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_20 (Length: 353)
Name: NF9863_high_20
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 21383466 - 21383148
Alignment:
| Q |
11 |
cacagatctcgatagaagcattactaatttaagttgataatattcgattagtggaattgaatccgtaattaatgtgatattataatcattcctcaactca |
110 |
Q |
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| T |
21383466 |
cacagatctcgatggaagcattactaatataagttgataatattcgattagtggaattgaatccgtaattaatgtgatattataatcattcctcagctca |
21383367 |
T |
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| Q |
111 |
gttattgtagatttatttgtttaattttccatgtctctttttcgtgaagcattagaatacgtattactattagtagtaatctgataatcaaccaagtgga |
210 |
Q |
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| T |
21383366 |
attattgtagatttatttgtttaattttccatgtctctttttcgtgaagcattagaatacgtatta------gtagtaatctgataatcaaccaagtgga |
21383273 |
T |
|
| Q |
211 |
tcctgacaattatgtaataatacaaatatatacaaataattttgatgcttacatgggtaacccgttaacgtcatcttcatgaaattaacggtaaccaacg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21383272 |
tcctgacaattatgtaataatacaaatatatacaaataattttgatgcttacatgggtaacacgttaacgtcatcttcatgaaattaacggtaaccaacg |
21383173 |
T |
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| Q |
311 |
actattgtcgtatgccataagctag |
335 |
Q |
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||||||||||||||||||||||||| |
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| T |
21383172 |
actattgtcgtatgccataagctag |
21383148 |
T |
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