View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9863_high_32 (Length: 269)
Name: NF9863_high_32
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_32 |
 | |
|
| [»] scaffold0155 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8842958 - 8843209
Alignment:
| Q |
1 |
aataagtagaaaaaccacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8842958 |
aataagtagaaaaaccacaaaatgagtcgatacttctctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttg |
8843057 |
T |
|
| Q |
101 |
ttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8843058 |
ttgatgtagatatcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttga |
8843157 |
T |
|
| Q |
201 |
tcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcattt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8843158 |
tcttgcacaatacacaattgatgtgcttaatgacaattcgtcccgcgcattt |
8843209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 8647676 - 8647446
Alignment:
| Q |
8 |
agaaaaaccacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgt |
107 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8647676 |
agaaaaaacacaaaatgagtcaatacttctctctcttgttgatgctttttgttctatgtgttgcttcctccaattcaatttcagccaaagttgttgatgt |
8647577 |
T |
|
| Q |
108 |
agatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgca |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||| |
|
|
| T |
8647576 |
agatgtcatttgcagagaagcctccaatcctacatattgttcaaatcttctcaactcaaagcaaggaggtgcaaaaggtgtagatcttgtcgaccttgca |
8647477 |
T |
|
| Q |
208 |
caatacacaattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |
|
|
| T |
8647476 |
gaatacacaattgatgtgcttagtgagaatt |
8647446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 8507909 - 8507687
Alignment:
| Q |
16 |
cacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtca |
115 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8507909 |
cacaaaatgagtcaatatttctctctctacttggtgattcttattctatgtgttgcttcctccaattcaatttcagccaaagttgttgatgtagatgtca |
8507810 |
T |
|
| Q |
116 |
tttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacac |
215 |
Q |
| |
|
||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8507809 |
tttgcaaagaagcctccaatccttcattttgttcaaatcttctcaactcaaaaccaggatgagcaaaaagtgtagatcttgttgatcttgcacaatacac |
8507710 |
T |
|
| Q |
216 |
aattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
|||| | |||||| |||| |||| |
|
|
| T |
8507709 |
aattaaggtgcttgatgaaaatt |
8507687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 242
Target Start/End: Original strand, 8527226 - 8527431
Alignment:
| Q |
37 |
tctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatc |
136 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
8527226 |
tctctcttgttggtgcttttgattctatgtgttgcttcctccaattcaatctcagccaaagttgttgatgtggatatcatttgcaaagaagcatccaatc |
8527325 |
T |
|
| Q |
137 |
ctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaa |
236 |
Q |
| |
|
|| ||||||| |||||||||||||| || ||| ||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||| | || |
|
|
| T |
8527326 |
cttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataa |
8527425 |
T |
|
| Q |
237 |
ttcgtc |
242 |
Q |
| |
|
|||||| |
|
|
| T |
8527426 |
ttcgtc |
8527431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 242
Target Start/End: Complemental strand, 8541263 - 8541058
Alignment:
| Q |
37 |
tctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatc |
136 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
8541263 |
tctctcttgttggtgcttttgattctatgtgttgcttcctccaattcaatctcagccaaagttgttgatgtggatatcatttgcaaagaagcatccaatc |
8541164 |
T |
|
| Q |
137 |
ctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaa |
236 |
Q |
| |
|
|| ||||||| |||||||||||||| || ||| ||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||| | || |
|
|
| T |
8541163 |
cttcgtattgctcaaatcttctcaattcgaagccaggaggtgcaaaaggtgtagatcttgtcgaccttgcacgatacacaattgatgtgcttaataataa |
8541064 |
T |
|
| Q |
237 |
ttcgtc |
242 |
Q |
| |
|
|||||| |
|
|
| T |
8541063 |
ttcgtc |
8541058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 8514354 - 8514550
Alignment:
| Q |
37 |
tctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatc |
136 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
8514354 |
tctctcttgctggtgcttcttattctatgttttgcttcctccaattcaatttcagccgaagttgttgacgtagatatcatttgcaaagaagcctctaatc |
8514453 |
T |
|
| Q |
137 |
ctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatga |
233 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8514454 |
aatcgtattgctcaaatcttctcaactcgaagccaggaggtgcaaaaggtgtagatcttgttgaccttgcacaatacacaattgatgtgcttaatga |
8514550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 40 - 237
Target Start/End: Original strand, 8548690 - 8548887
Alignment:
| Q |
40 |
ctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatccta |
139 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8548690 |
ctcttgttagtgcttcttattctatgtgttgcttccttcaattcaatttcagccaaagttgttgatgtagatgtcatctgcaatgaagcttccaatcctt |
8548789 |
T |
|
| Q |
140 |
cgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaat |
237 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||| | ||||||||||| || ||||| |
|
|
| T |
8548790 |
catattgttcgtatcttctcaactcaaagccaggaggagcaaaaggtgtagatcttgtccaccttgcagaatacatacttgatgtgcttgatcacaat |
8548887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 5082684 - 5082888
Alignment:
| Q |
16 |
cacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtca |
115 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
5082684 |
cacaaaatgagtcaagactcctctctcttgttggtgctttttgttctctgtgtaacttcctccaattcaatttcagccaaagttattgatgttgatgtca |
5082783 |
T |
|
| Q |
116 |
tttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacac |
215 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| | |||||| |
|
|
| T |
5082784 |
tttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggt-cagatcttgtcgaccttgcgcgatacac |
5082882 |
T |
|
| Q |
216 |
aattga |
221 |
Q |
| |
|
|||||| |
|
|
| T |
5082883 |
aattga |
5082888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 8834438 - 8834222
Alignment:
| Q |
10 |
aaaaaccacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtag |
109 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8834438 |
aaaaaacacaaaatgagtcaatattcttctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatgtag |
8834339 |
T |
|
| Q |
110 |
atgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcaca |
209 |
Q |
| |
|
|||||||||||| |||| ||||| ||| | | ||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
8834338 |
atgtcatttgcagagaatcctccgatcattcatattgttcaaatcttctcaactcaaag------------cgaggtgtagatcttgtgaaccttgcaca |
8834251 |
T |
|
| Q |
210 |
atacacaattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
|
|
| T |
8834250 |
atacacaattgatgtgctcaataacaatt |
8834222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 8625625 - 8625444
Alignment:
| Q |
56 |
ttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatct |
155 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| | ||||||||| |||| |
|
|
| T |
8625625 |
ttattctatttgttgtttccttcaattcaatttcagccaaagttgttgatgtagatgtcatctgcaatgaagcttccaatccttcatattgttcatatct |
8625526 |
T |
|
| Q |
156 |
tctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaat |
237 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||| | |||||| |||||| | ||||||||||| || ||||| |
|
|
| T |
8625525 |
tctcaactcaaagccaggaggagcaaaaggcgtagatcttgtccaccttgcagaatacatacttgatgtgcttgatcacaat |
8625444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 8830721 - 8830512
Alignment:
| Q |
17 |
acaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcat |
116 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
8830721 |
acaaaatgagtcaatattcttctctcttgttggtgcttcttattctatgtgttgcctcctccaattcagtttcagccaaagttgttgatgtagatctcat |
8830622 |
T |
|
| Q |
117 |
ttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacaca |
216 |
Q |
| |
|
||||| |||||||||| ||| | | ||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
8830621 |
ttgcagagaagcctccgatcattcatattgttcaaatcttctaaactcaaag------------cgaggtgtagatcttgtgaaccttgcacaatacaca |
8830534 |
T |
|
| Q |
217 |
attgatgtgcttaatgacaatt |
238 |
Q |
| |
|
||||||||||| ||| |||||| |
|
|
| T |
8830533 |
attgatgtgctcaataacaatt |
8830512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 8627385 - 8627517
Alignment:
| Q |
57 |
tattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatctt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||| | ||||||||||||||| |
|
|
| T |
8627385 |
tattctatgtgttgcttcctccaattcaatttcagccaaagttattgatgtagatgtcatttgcagag--------aatccttcatattgttcaaatctt |
8627476 |
T |
|
| Q |
157 |
ctcaactcaaagtcaggaggagcaaaaggtgtagatcttgt |
197 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
8627477 |
ctcaactcaaagccagttggtgcaaaaggtgtagatcttgt |
8627517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 8504690 - 8504602
Alignment:
| Q |
148 |
tcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaa |
236 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||| ||||||||| |||| | | ||||| ||||||||||||||||| ||||||| |
|
|
| T |
8504690 |
tcaaattttctcaatttaaagtcaggaggagcaaaaggcgtagatcttcttgaccctacacaacacacaattgatgtgcttcatgacaa |
8504602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 8632100 - 8632050
Alignment:
| Q |
186 |
tgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaat |
237 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8632100 |
tgtagatattgttgaccttgcacaatacacaattgatgtgc-taatgacaat |
8632050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 8639577 - 8639632
Alignment:
| Q |
182 |
aaggtgtagatcttgttgatctt-gcacaatacacaattgatgtgcttaatgacaa |
236 |
Q |
| |
|
||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8639577 |
aaggtgtagatatcgttgacctttgcacaatacacaattgatgtgcttaatgacaa |
8639632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 8443944 - 8444028
Alignment:
| Q |
144 |
ttgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgctt |
228 |
Q |
| |
|
|||||||| |||||||| |||||| | ||||| |||||||| | ||| || | | |||||| ||||||||||||||||||||| |
|
|
| T |
8443944 |
ttgttcaacccttctcaattcaaagcccggaggggcaaaaggcgcagacctcgctactcttgcgcaatacacaattgatgtgctt |
8444028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 8452748 - 8452832
Alignment:
| Q |
144 |
ttgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgctt |
228 |
Q |
| |
|
|||||||| |||||||| |||||| | ||||| |||||||| | ||| || | | |||||| ||||||||||||||||||||| |
|
|
| T |
8452748 |
ttgttcaacccttctcaattcaaagcccggaggggcaaaaggcgcagacctcgctactcttgcgcaatacacaattgatgtgctt |
8452832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 26274 - 26052
Alignment:
| Q |
16 |
cacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtca |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||| || ||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
26274 |
cacaaaatgagtcaatactcctctctcttgttagtgtttgttattctatgtttttcttcctccaattcaatttcagccaaagttgttgatgtagatgtta |
26175 |
T |
|
| Q |
116 |
tttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacac |
215 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
26174 |
tttgcaaagaagcatccaatccttcatattgttcaaatctcctcaactcaaagccaggaggagcaaaaaatgtagatcttgttgatcttgcaaattacac |
26075 |
T |
|
| Q |
216 |
aattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
|||| |||| |||| ||||||| |
|
|
| T |
26074 |
tattggtgtggttaaggacaatt |
26052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 34229 - 34430
Alignment:
| Q |
37 |
tctctcttgttggtgctttttattctatgtgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatc |
136 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |||||| || ||||| || | ||||||||||| ||| | |||||||| ||||||||| |||||| |
|
|
| T |
34229 |
tctctcttgttggggctttttattctacatgttgtttcctctaaatcaatatccaccaaagttgttgaagtaaaagtcatttgtaaagaagcccccaatc |
34328 |
T |
|
| Q |
137 |
ctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaa |
236 |
Q |
| |
|
|| | ||||| | |||||||||||||||||| ||||| ||| ||||||||||||||||||| | |||||| | ||||||||||||||||| |||||||| |
|
|
| T |
34329 |
cttcatattgcttaaatcttctcaactcaaaaccaggacgagtaaaaggtgtagatcttgttaaccttgcagagtacacaattgatgtgctcaatgacaa |
34428 |
T |
|
| Q |
237 |
tt |
238 |
Q |
| |
|
|| |
|
|
| T |
34429 |
tt |
34430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 10779962 - 10779787
Alignment:
| Q |
66 |
tgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactca |
165 |
Q |
| |
|
||||| ||||||||| ||| |||| |||||||||| || ||| |||||||||||||||||||||| |||||| | ||||| | |||||||||||||||| |
|
|
| T |
10779962 |
tgttgattcctccaaatcagtttccactaaagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactca |
10779863 |
T |
|
| Q |
166 |
aagtcaggaggagcaaaaggt---gtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||| | |||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
10779862 |
aagccaggaggagcaaaaggtgtagtagatcttgttcaccttgcatattacacaattgatgtgcttaataacaatt |
10779787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 10973571 - 10973396
Alignment:
| Q |
66 |
tgttgcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactca |
165 |
Q |
| |
|
||||| ||||||||| ||| |||| |||||||||| || ||| |||||||||||||||||||||| |||||| | ||||| | |||||||||||||||| |
|
|
| T |
10973571 |
tgttgattcctccaaatcagtttccactaaagttgtcgaagtaaatgtcatttgcaaagaagcctcaaatccttcatattgcttaaatcttctcaactca |
10973472 |
T |
|
| Q |
166 |
aagtcaggaggagcaaaaggt---gtagatcttgttgatcttgcacaatacacaattgatgtgcttaatgacaatt |
238 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||| | |||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
10973471 |
aagccaggaggagcaaaaggtgtagtagatcttgttcaccttgcatattacacaattgatgtgcttaataacaatt |
10973396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 10782297 - 10782148
Alignment:
| Q |
39 |
tctcttgttggtgctttttattctatgtgtt------gcttcctccaattcaatttcagctaaagttgttgatgtagatgtcatttgcaaagaagcctcc |
132 |
Q |
| |
|
||||||||||||||||||| |||||| |||| | ||||||||| ||| |||| ||||||||||||| ||| ||| |||| |||||||||||| |
|
|
| T |
10782297 |
tctcttgttggtgctttttcttctatatgttaatgttgattcctccaaatcagtttccactaaagttgttgaagtaaatggcatt---aaagaagcctcc |
10782201 |
T |
|
| Q |
133 |
aatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaagg |
185 |
Q |
| |
|
|||||| | ||||| | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10782200 |
aatccttcatattgcttaaatcttctcaactcaaagtcaggaagagcaaaagg |
10782148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 4538662 - 4538788
Alignment:
| Q |
94 |
aaagttgttgatgtagatgtcatttgcaaagaagcctccaatcctacgtattgttcaaatcttctcaactcaaagtcaggaggagcaaaaggtgtagatc |
193 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4538662 |
aaagttattgatgttgatgtcatttgcaaagaagcctccaatcaatcatattgttcaaatcttctcaactcaaagccaggaggagcaaaaggtgcagatc |
4538761 |
T |
|
| Q |
194 |
ttgttgatcttgcacaatacacaattg |
220 |
Q |
| |
|
|||| || ||||| | ||||||||||| |
|
|
| T |
4538762 |
ttgtcgaccttgcgcgatacacaattg |
4538788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 4538599 - 4538651
Alignment:
| Q |
16 |
cacaaaatgagtcgatacttttctctcttgttggtgctttttattctatgtgt |
68 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
4538599 |
cacaaaatgagtcaagactcctctctcttgttggtgctttttgttctctgtgt |
4538651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University