View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_41 (Length: 251)
Name: NF9863_high_41
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 33145577 - 33145349
Alignment:
| Q |
10 |
ttaaacatttgcgtgacttaacttactttggaattaacacctaattggttggaacaaaatgaatttcatatggagagacttaaataacaaatgaattcat |
109 |
Q |
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| T |
33145577 |
ttaaacacttacgtgatttaactcacgttgggattaacacataattggttggaacaaaatgaatttcatatgaagagacttaaataacaaatgaattcat |
33145478 |
T |
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| Q |
110 |
ctagttggttggaacaaaattgcccgcgccaaagcatcaaggtggtttgggaattagaacaactagagaaactaaatatttgtcttttgagtaaacttgt |
209 |
Q |
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| T |
33145477 |
ctagttggttggaacaaaattgcccgcgccaaagcatcaaggtggtttgggaattagaacgactagagaaactaaatatttttcttttgagtaaacttgt |
33145378 |
T |
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| Q |
210 |
gtgggatatactccaatcctcctcaatct |
238 |
Q |
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| T |
33145377 |
ctgggatatgctccaatcctcctcaatct |
33145349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 24132691 - 24132581
Alignment:
| Q |
104 |
attcatctagttggttggaacaaaattgcccgcgccaaagcatcaaggtggtttgggaattagaacaactagagaaactaaatatttgtcttttgagtaa |
203 |
Q |
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| T |
24132691 |
attcatttggttggttggaataaaatttcccgc-cataagaatcaaggtggcttgggaatcagaacagctagggaaact-aatatttgtcttattggcaa |
24132594 |
T |
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| Q |
204 |
acttgtgtgggat |
216 |
Q |
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| T |
24132593 |
acttgtttgggat |
24132581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 14292411 - 14292461
Alignment:
| Q |
80 |
tggagagacttaaataacaaatgaattcatctagttggttggaacaaaatt |
130 |
Q |
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| T |
14292411 |
tggagagactctaataacaaaggtattcatctggttggttggaacaaaatt |
14292461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 14308460 - 14308510
Alignment:
| Q |
80 |
tggagagacttaaataacaaatgaattcatctagttggttggaacaaaatt |
130 |
Q |
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| T |
14308460 |
tggagagactctaataacaaaggtattcatctggttggttggaacaaaatt |
14308510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 13030957 - 13031118
Alignment:
| Q |
71 |
aatttcatatggagagacttaaataacaaatgaattcatctagttggttggaacaaaattgcccgcgccaaagcatcaaggtggtttgggaattagaaca |
170 |
Q |
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| T |
13030957 |
aatttcatctggagagactcaa-taacaaagaaattcatctagttggttggaacaaaattgcacgctc-aaagcatcaaggtggtttgggaatctgaaca |
13031054 |
T |
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| Q |
171 |
actagagaaactaaatatttgtcttttgagtaaacttgtgtgggatatactccaatcctcctcaa |
235 |
Q |
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| T |
13031055 |
actagagaaact-aatatttgtcttttgggtaaacttgtctggtatatgctccaatccttctcaa |
13031118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 45716755 - 45716715
Alignment:
| Q |
92 |
aataacaaatgaattcatctagttggttggaacaaaattgc |
132 |
Q |
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| T |
45716755 |
aataacaaaggtattcatctggttggttggaacaaaattgc |
45716715 |
T |
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