View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9863_high_45 (Length: 246)
Name: NF9863_high_45
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_45 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31232309 - 31232483
Alignment:
| Q |
1 |
caccaccgacacagtaattt-tcctgcaatctct--atagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtag |
97 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| |||||||| |||||| |||||||||| |||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
31232309 |
caccaccgacagggtaatttctccggcaatctctttatagaaacagtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaatagagtag |
31232408 |
T |
|
| Q |
98 |
tattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
170 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
31232409 |
tattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
31232483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 38404429 - 38404603
Alignment:
| Q |
1 |
caccaccgacacagtaattt-tcctgcaatctct--atagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtag |
97 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| |||||||| |||||| |||||||||| |||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38404429 |
caccaccgacagggtaatttctccggcaatctctttatagaaacagtaaaaaactttttgcccaaatgtgtattcaattagttactaatcaatagagtag |
38404528 |
T |
|
| Q |
98 |
tattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
170 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
38404529 |
tattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
38404603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 100019 - 100193
Alignment:
| Q |
1 |
caccaccgacacagtaattt-tcctgcaatctct--atagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagtag |
97 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||| |||||||| |||||| ||||||||| |||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
100019 |
caccaccgacagggtaatttctccggcaatctctttatagaaacagtaaaaaactttttgctcaaatgtgtattcaattagttactaatcaatagagtag |
100118 |
T |
|
| Q |
98 |
tattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
170 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
100119 |
tattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
100193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 44300749 - 44300928
Alignment:
| Q |
1 |
caccaccgacacagtaa--ttttcctgcaatctct--atagaaactgtaaaacactttttgcctaaatttgtattcaattagttacttatcaatagagta |
96 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
44300749 |
caccaccgacacggtaaacttttccggcaatctctttatagaaacagtaaaaaactttttgcctaaatttgtattcaattacttactaatcaataaagta |
44300848 |
T |
|
| Q |
97 |
gta-----ttatggtattgcagaaatgagatttaattttctgttatttattggttttctaattttgattcaagcaagttc |
171 |
Q |
| |
|
||| |||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44300849 |
gtactgtcttatagtattgcaaaatagagatttaattttctgtcatttattggttttctaattttgattcaatcaagttc |
44300928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36236167 - 36235992
Alignment:
| Q |
1 |
caccaccgacacagtaattt-tcctgcaatctc--tatagaaactgtaaaacactttttgcctaaatttgtattcaatta-gttacttatcaatagagta |
96 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||| ||||||||| |||||| ||||||| || |||| |||||||||||| |||||| |||||||||||| |
|
|
| T |
36236167 |
caccaccgacagggtaatttctccggcaatctcgttatagaaacagtaaaaaacttttttcccaaatgtgtattcaattaagttactaatcaatagagta |
36236068 |
T |
|
| Q |
97 |
gtattatggtattgcagaaatgagatttaattt--tctgttatttattggttttctaattttgattcaagcaagtt |
170 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
36236067 |
gtattatgatattgcaaaactgagatttaattttctctgttatttattggttttctaattttgattgaatcaagtt |
36235992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 30470514 - 30470583
Alignment:
| Q |
167 |
agttcttctcatattataaataacttataatatggatcgcagcaactaatgcttcaattttatgttgtct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
30470514 |
agttcttctcatattataaataacttataataaggattgcagcaactaatgcttcaattttatgctgtct |
30470583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University