View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_54 (Length: 225)
Name: NF9863_high_54
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 9376531 - 9376325
Alignment:
| Q |
1 |
aaaatgaaggtgcatttgaattgccagttctaatgaattttcaactctcctatccaatgtaagaaagtcgtggttatgcggggttttctatgctatgtta |
100 |
Q |
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| T |
9376531 |
aaaatgaaggtgcatttgaattgccagttctaatgaattttcaactctcctatccaatgtaagaaagtcgtggttatgcggggttttctatgctatgtta |
9376432 |
T |
|
| Q |
101 |
tttttctattttatgtttggtgtcttggctcttgcattattatgatgctgtaaagttgaaacttaattggtcagttacacatatatctgaacttaaccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9376431 |
tttttctattttatgtttggtgtcttggctcttgcattattatgatgctgtaaagttgaaacttaattggtcagttacacatatatctgaacttaaccac |
9376332 |
T |
|
| Q |
201 |
ctgcatg |
207 |
Q |
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||||||| |
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| T |
9376331 |
ctgcatg |
9376325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 9339912 - 9339846
Alignment:
| Q |
129 |
ctcttgcattattatgatgctgtaaagttgaaacttaattggtcagttacacatatatctgaactta |
195 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||| |||||| |
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| T |
9339912 |
ctcttgcattattacgatgttgtaaagttgaaacttaattggttagttgaacatatatctcaactta |
9339846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 38414363 - 38414330
Alignment:
| Q |
155 |
gttgaaacttaattggtcagttacacatatatct |
188 |
Q |
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| T |
38414363 |
gttgaaacttaatttgtcagttacacatatatct |
38414330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 33541090 - 33541029
Alignment:
| Q |
131 |
cttgcattattatgatgctgtaaagttgaaacttaattggtcagttacacatatatctgaact |
193 |
Q |
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| T |
33541090 |
cttgcattattatggtgctgtaaagttgaaactt-attcatcagttacacttatatctcaact |
33541029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 5691404 - 5691370
Alignment:
| Q |
152 |
aaagttgaaacttaattggtcagttacacatatat |
186 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
5691404 |
aaagttgaaacttaattggtcagttacatatatat |
5691370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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