View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_high_61 (Length: 206)
Name: NF9863_high_61
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 1443060 - 1443245
Alignment:
| Q |
15 |
caaaggtgtgcttactggtctaaaaatatgttaaaacttaaaatatctgtttaatgtacatgctggaataaaattgttttactgcttttatccgaagtct |
114 |
Q |
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| T |
1443060 |
caaaggcgtgcttactggtctaaaaatatgttaaaacttaaaatatctgtttaatgtacatgctggaataaaattgttttactgcttttatctgaagttt |
1443159 |
T |
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| Q |
115 |
aagaaaagaagcttagaaaagatcttaaagagaaatatataatagaagcacttgttttcaaaccttataaaagattatgatgtcca |
200 |
Q |
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| T |
1443160 |
aagaaaagaagcttagaaaagttcttaaagagaaatatataatagaagcacttgttttcaaaccttataaaagattatgatgtcca |
1443245 |
T |
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Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 1483339 - 1483461
Alignment:
| Q |
79 |
ggaataaaattgttttactgcttttatccgaagtctaagaaaagaagcttagaaaagatcttaaa-gagaaatatataatagaagcacttgttttcaaac |
177 |
Q |
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| T |
1483339 |
ggaataaaattgttttggtgcttctattggaagtttaagaaaagaagctcagagaagatcttaaaagggaaatatataataaaaggacctgttttcaaag |
1483438 |
T |
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| Q |
178 |
cttataaaagattatgatgtcca |
200 |
Q |
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| T |
1483439 |
cttataaatgattatgatgtcca |
1483461 |
T |
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