View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9863_high_9 (Length: 427)

Name: NF9863_high_9
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9863_high_9
NF9863_high_9
[»] chr2 (3 HSPs)
chr2 (191-412)||(3462857-3463077)
chr2 (72-110)||(3462738-3462776)
chr2 (1-37)||(3462667-3462703)
[»] chr8 (3 HSPs)
chr8 (191-390)||(30265676-30265874)
chr8 (1-37)||(30266028-30266064)
chr8 (74-110)||(30265955-30265991)
[»] chr3 (3 HSPs)
chr3 (191-314)||(39776965-39777087)
chr3 (322-390)||(39777122-39777190)
chr3 (1-37)||(39776815-39776851)
[»] chr5 (4 HSPs)
chr5 (322-390)||(39164830-39164898)
chr5 (72-110)||(39164563-39164601)
chr5 (199-239)||(39164678-39164718)
chr5 (73-107)||(39538515-39538549)
[»] chr4 (3 HSPs)
chr4 (72-110)||(52399229-52399267)
chr4 (1-37)||(52399302-52399338)
chr4 (1-37)||(470125-470161)
[»] chr7 (4 HSPs)
chr7 (1-37)||(7219367-7219403)
chr7 (1-37)||(18791140-18791176)
chr7 (1-37)||(34996775-34996811)
chr7 (1-37)||(40786348-40786384)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 191 - 412
Target Start/End: Original strand, 3462857 - 3463077
Alignment:
Q  191 gtaggccatatttgaattataactattttaaataatttagttaactattgatttagttattaaaatttatatcttaatcacgtggtggatacgtgatgct 290  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3462857 gtaggtcatatttgaattataactattttaaataatttagttaactattgatttagttattaaaatttatatcttaatcacgtggtgggtacgtgatgct 3462956  T
Q  291 aaaagcctggaaacaaaaactacacaagcagaaggacaatattggaaaaaccaaagttaaagggtcctctctccactttcttcgctactttggagagaag 390  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3462957 -aaagcctggaaacaaaaactacacaagcagaaggacaatattggaaaaatcaaagttaaagggtcctctctccactttcttcgctactttggagagaag 3463055  T
Q  391 nnnnnnncatgtgggacccagt 412  Q
           |||||||||||||||    
T  3463056 aaaaaaacatgtgggacccagt 3463077  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 3462738 - 3462776
Alignment:
Q  72 tgttgattgttaataaaagtacaaaaataaccttgattt 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3462738 tgttgattgttaataaaagtacaaaaataaccttgattt 3462776  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3462667 - 3462703
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  3462667 gtgagaaatagaatagatttgatgtagtgtttggtat 3462703  T

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Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 191 - 390
Target Start/End: Complemental strand, 30265874 - 30265676
Alignment:
Q  191 gtaggccatatttgaattataactattttaaataatttagttaactattgatttagttattaaaatttatatcttaatcacgtggtggatacgtgatgct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  30265874 gtaggccatatttgaattataactattttaaataatttagttaactattgatttagttattgaaatttatatcttaatcacgtggtgggtacgtgatgct 30265775  T
Q  291 aaaagcctggaaacaaaaactacacaagcagaaggacaatattggaaaaaccaaagttaaagggtcctctctccactttcttcgctactttggagagaag 390  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265774 aaa-gtctggaaacaaaaactacacaagcagaaggacaatattggaaaaaccaaagttaaagggtcctctctccactttcttcgctactttggagagaag 30265676  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30266064 - 30266028
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30266064 gtgagaaatagaataaatttgatgtagtgtttggtat 30266028  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 30265991 - 30265955
Alignment:
Q  74 ttgattgttaataaaagtacaaaaataaccttgattt 110  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  30265991 ttgatcgttaataaatgtacaaaaataaccttgattt 30265955  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 191 - 314
Target Start/End: Original strand, 39776965 - 39777087
Alignment:
Q  191 gtaggccatatttgaattataactattttaaataatttagttaactattgatttagttattaaaatttatatcttaatcacgtggtggatacgtgatgct 290  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||  ||||| |||| ||| ||| ||||| |||| |||| ||||||||  |    
T  39776965 gtaggccttatttgaattataactattttagataattaagttaactattgatccagttactaaattttttattttaataacgtagtgggtacgtgat-tt 39777063  T
Q  291 aaaagcctggaaacaaaaactaca 314  Q
     |||| ||||||||||||||||||    
T  39777064 taaagtctggaaacaaaaactaca 39777087  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 39777122 - 39777190
Alignment:
Q  322 aaggacaatattggaaaaaccaaagttaaagggtcctctctccactttcttcgctactttggagagaag 390  Q
    |||| |||||||||||||    || ||||||||| |||||||||||||||||||||| |||||||||||    
T  39777122 aagggcaatattggaaaattggaaattaaagggtgctctctccactttcttcgctaccttggagagaag 39777190  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39776815 - 39776851
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  39776815 gtgagaaatagaatagatttgatgtagtgtttagtat 39776851  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 39164830 - 39164898
Alignment:
Q  322 aaggacaatattggaaaaaccaaagttaaagggtcctctctccactttcttcgctactttggagagaag 390  Q
    |||||||||||||||||||| ||| || |||||| |||||||||||||||||||||  |||||||||||    
T  39164830 aaggacaatattggaaaaacaaaaattgaagggtgctctctccactttcttcgctatattggagagaag 39164898  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 39164563 - 39164601
Alignment:
Q  72 tgttgattgttaataaaagtacaaaaataaccttgattt 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39164563 tgttgattgttaataaaagtacaaaaataaccttgattt 39164601  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 39164678 - 39164718
Alignment:
Q  199 tatttgaattataactattttaaataatttagttaactatt 239  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  39164678 tatttgaattataactattttagataattaagttaactatt 39164718  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 39538549 - 39538515
Alignment:
Q  73 gttgattgttaataaaagtacaaaaataaccttga 107  Q
    |||||||||| ||||||||||||||||||||||||    
T  39538549 gttgattgttcataaaagtacaaaaataaccttga 39538515  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 52399267 - 52399229
Alignment:
Q  72 tgttgattgttaataaaagtacaaaaataaccttgattt 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52399267 tgttgattgttaataaaagtacaaaaataaccttgattt 52399229  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52399338 - 52399302
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  52399338 gtgagaaatagaatagatttgatgtagtgtttggtat 52399302  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 470161 - 470125
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  470161 gtgagaaatagaatagatttgatgtattgtttggtat 470125  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7219403 - 7219367
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  7219403 gtgagaaatagagtagatttaatgtagtgtttggtat 7219367  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18791140 - 18791176
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  18791140 gtgagaaatagagtagatttaatgtagtgtttggtat 18791176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34996811 - 34996775
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  34996811 gtgagaaatagagtagatttgatgtattgtttggtat 34996775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40786384 - 40786348
Alignment:
Q  1 gtgagaaatagaatagatttgatgtagtgtttggtat 37  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  40786384 gtgagaaatagagtagatttgatgtattgtttggtat 40786348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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