View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9863_low_10 (Length: 426)

Name: NF9863_low_10
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9863_low_10
NF9863_low_10
[»] scaffold0036 (2 HSPs)
scaffold0036 (16-295)||(99729-100009)
scaffold0036 (301-390)||(99573-99662)
[»] chr2 (3 HSPs)
chr2 (14-295)||(38404139-38404421)
chr2 (301-390)||(38403983-38404072)
chr2 (301-410)||(3083181-3083289)
[»] chr4 (1 HSPs)
chr4 (14-215)||(44300539-44300741)
[»] chr1 (3 HSPs)
chr1 (33-295)||(33814113-33814368)
chr1 (33-295)||(33873583-33873838)
chr1 (301-410)||(40909930-40910038)
[»] chr8 (2 HSPs)
chr8 (16-81)||(36236177-36236242)
chr8 (301-349)||(24469255-24469303)
[»] chr3 (1 HSPs)
chr3 (16-81)||(31232234-31232299)
[»] chr5 (1 HSPs)
chr5 (14-193)||(16190128-16190308)


Alignment Details
Target: scaffold0036 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 100009 - 99729
Alignment:
Q  16 agactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacatagt 115  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  100009 agactggatctacggcgacagcgattgagattacttcggcagagaaagtacttctgagcatgacttgcaacctgcataggcgttcttgttttcacatagt 99910  T
Q  116 tccttgagattcctctc-agtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtccacgaaatccctgatccattcga 214  Q
    ||||||||||||||||| | ||||||||  ||||||| |||||||||||| |||||| ||| |||||||| |||||||||| ||||| |||||||||| |    
T  99909 tccttgagattcctctccaatcacctttatcaactttctgcaatccaaccgaaaacaacttgtgctcttcatccgtccacggaatccttgatccattcaa 99810  T
Q  215 agaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 295  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||    
T  99809 agaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt 99729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 99662 - 99573
Alignment:
Q  301 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagt 390  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  99662 gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagt 99573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 38404421 - 38404139
Alignment:
Q  14 agagactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacata 113  Q
    |||||||||||||| || ||| || |||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  38404421 agagactggatctatggcgacagcaattgcgattacttcggcagagaaagtacttctgagcatgacttgcaacctgcgaaggcgttcttgttttcacata 38404322  T
Q  114 gttccttgagattcctctc-agtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtccacgaaatccctgatccattc 212  Q
    ||||||||||||||||||| | ||||||||  ||||||| |||||||||||| |||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  38404321 gttccttgagattcctctccaatcacctttgtcaactttctgcaatccaaccgaaaacaacttgtgctcttcctccgtccacggaatccttgatccattc 38404222  T
Q  213 gaagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 295  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||    
T  38404221 aaagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt 38404139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 38404072 - 38403983
Alignment:
Q  301 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagt 390  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  38404072 gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagt 38403983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 3083289 - 3083181
Alignment:
Q  301 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 400  Q
    ||||||||||||| |||| ||| |||||||| |||||||||||  ||||| ||||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  3083289 gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca 3083191  T
Q  401 taagatgtag 410  Q
    ||||||||||    
T  3083190 taagatgtag 3083181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 44300741 - 44300539
Alignment:
Q  14 agagactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacata 113  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||    
T  44300741 agagactggatctacggcgacggcgattgagattacttcggcggagaaagtacttttgagcatgacttgcaacctgcgtaggtgttcttgttttcacata 44300642  T
Q  114 gttccttgagattcctct-cagtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtccacgaaatccctgatccattc 212  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  44300641 gttccttgagattcctctccaatcaccttttccaactttctgcaatccaaccaagaacaacttatgctcttcctccgtccacggaatccctgatccattc 44300542  T
Q  213 gaa 215  Q
    |||    
T  44300541 gaa 44300539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 295
Target Start/End: Complemental strand, 33814368 - 33814113
Alignment:
Q  33 acggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacatagttccttgagattcctctc 132  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||        |||||||| |||||||||||||||||||||||||||||| ||||    
T  33814368 acggcgattgaaattacttaggcggagaaagtacttctgagcatgact--------gcgtaggcgttcttgttttcacatagttccttgagattcttctc 33814277  T
Q  133 -agtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtccacgaaatccctgatccattcgaagaaaatcaataacaat 231  Q
     | |||| | | |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  33814276 taatcacatatgccaactttctgcaatccaaccaaaaacagcttgtgctcttcctccgtgcacggaatccctgatccattcaaagaaaatcaataacaat 33814177  T
Q  232 aattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 295  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33814176 aatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt 33814113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 295
Target Start/End: Complemental strand, 33873838 - 33873583
Alignment:
Q  33 acggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacatagttccttgagattcctctc 132  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||        |||||||| |||||||||||||||||||||||||||||| ||||    
T  33873838 acggcgattgaaattacttaggcggagaaagtacttctgagcatgact--------gcgtaggcgttcttgttttcacatagttccttgagattcttctc 33873747  T
Q  133 -agtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtccacgaaatccctgatccattcgaagaaaatcaataacaat 231  Q
     | |||| | | |||||||| ||||||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||||||    
T  33873746 taatcacatatgccaactttctgcaatccaaccaaaaacagcttgtgctcttcctccgtgcacggaatccctgatccattcaaagaaaatcaataacaat 33873647  T
Q  232 aattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt 295  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  33873646 aatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt 33873583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 40910038 - 40909930
Alignment:
Q  301 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca 400  Q
    ||||||||||||| |||| ||| |||||||| |||||||||||  ||||| ||||||||| |||||||||| |||||||||| |||||||||||| ||||    
T  40910038 gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca 40909940  T
Q  401 taagatgtag 410  Q
    ||||||||||    
T  40909939 taagatgtag 40909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 36236177 - 36236242
Alignment:
Q  16 agactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgactt 81  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  36236177 agactggatctacggcgacagcgattgagattacttcggcagagaaagtacttctgagcatgactt 36236242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
Q  301 gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat 349  Q
    ||||||||||||| |||| ||| ||||  ||||||||||||||||||||    
T  24469255 gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat 24469303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 31232299 - 31232234
Alignment:
Q  16 agactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgactt 81  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  31232299 agactggatctacggcgacagcgattgagattacttcggcagagaaagtacttctgagcatgactt 31232234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 16190308 - 16190128
Alignment:
Q  14 agagactggatctacggagacggcgattgagattacttcggcggagaaagtacttcagagcatgacttgcaacctgcgtaggcattcttgttttcacata 113  Q
    ||||||||||||| ||| | ||||||||  | |||   |||||||| || |||||| ||||||||||||||||||| || ||  | || ||||||||| |    
T  16190308 agagactggatctccggcggcggcgattctggttatgacggcggaggaaatacttctgagcatgacttgcaacctgagttggtgtcctagttttcacaaa 16190209  T
Q  114 gttccttgagattcctct-cagtcaccttttccaactttttgcaatccaaccaaaaacatcttatgctcttcctccgtcca 193  Q
    ||| || || |||||||| || |||||||| ||||||| ||||||||| | ||| |||| ||| || ||||| || |||||    
T  16190208 gtttctagaaattcctctccaatcacctttaccaacttgttgcaatcccaacaagaacaacttgtgttcttcttctgtcca 16190128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University