View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_12 (Length: 422)
Name: NF9863_low_12
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 41089893 - 41090303
Alignment:
| Q |
20 |
aatagaccgaatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttggtcacaatcacnnnnnnnnnnn----gaataaatgttaa |
115 |
Q |
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| T |
41089893 |
aatagaccgaatcaataacgtaaaaatagttttctcttttgctaaaaatagcttcctcttggtcacaatcactttttttttttttttgaataaatgttaa |
41089992 |
T |
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| Q |
116 |
cgatcacatttatgttggcatatgtggtagggtgtttccatttgatcaacgtctaaaaatacttggaaatatgaatgatttataaacaatg--------- |
206 |
Q |
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| T |
41089993 |
cgatcacatttatgttggcatatgtggtagggtgtttctatttgctcaacgtctaaaaatacttcgaaatatgaatgatttataaacaatgcttatgaaa |
41090092 |
T |
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| Q |
207 |
---ctttaaattaatcccttccagatcaatgacaaggatgtggaaggagagataaggccaagaaaccatttttggcatatatattcattgttttgctgac |
303 |
Q |
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| T |
41090093 |
atgctttaaattaatcccttccagatcaatgacaaggatgtggaaggagagataaggccaagaaaccatttttggcatatatattcattgttttgctgac |
41090192 |
T |
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| Q |
304 |
ttcttcctagctgcattgaattggcagatctatagactacacatgtttttgtttatgaataccagcaacattcatttgggatttcgatcctcggctgcca |
403 |
Q |
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| T |
41090193 |
ttcttcctagctgcattgaattcgcagatctatagactacacatgtttttgtttatgaatagcagcaacattcatttgggatttcgatcctcggctgcca |
41090292 |
T |
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| Q |
404 |
aactctctgct |
414 |
Q |
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| T |
41090293 |
aactctttgct |
41090303 |
T |
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