View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_16 (Length: 398)
Name: NF9863_low_16
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 41122739 - 41122588
Alignment:
| Q |
242 |
aattatatgtgaatttgtggaatgtttcccttttgtaaccaccgttttttggataatacaacatttgtgatttgaacggttacgtacaccattaatctca |
341 |
Q |
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| T |
41122739 |
aattatatgtgaatttgtggaaagtttcccttttgtaaccaccgttttttggataatacaacatttgtgatttgaacggttacgtacaccattaatctca |
41122640 |
T |
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| Q |
342 |
ccccgtatacttctttttcattccattattatttaacttctttctctgcttc |
393 |
Q |
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| T |
41122639 |
ccctgtatacttctttttcattccattattatttaacttctttctccgcttc |
41122588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 41122993 - 41122862
Alignment:
| Q |
1 |
ctctaaatctcttcctctcctttgtttgtctctttttacttccgaaatttagttgacaacaactttgtaacatgatgaggacaccatgcatgaatcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41122993 |
ctctaaatctcttcctctcctttgtttgtctctttttacttccgaaatttagttgacaacaactttgtaacatgatgaggacaccatgcatgaatcaacc |
41122894 |
T |
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| Q |
101 |
accatcaatattcaggttttctttttaattga |
132 |
Q |
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| T |
41122893 |
accatcaatattcaggttttctttttaattga |
41122862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 39442944 - 39442793
Alignment:
| Q |
242 |
aattatatgtgaatttgtggaatgtttcccttttgtaaccaccgttttttggataatacaacatttgtgatttgaacggttacgtacaccattaatctca |
341 |
Q |
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| T |
39442944 |
aattatatgtgaatttgtggaaagtttcccttttgtaaccaccgttttttggataatacaacatttgtgatttgaacggttatgtacaccattaatctca |
39442845 |
T |
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| Q |
342 |
ccccgtatacttctttttcattccattattatttaacttctttctctgcttc |
393 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442844 |
ccctgtaaacttctttttcattccattattatttaacttctttctctgcttc |
39442793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 39443199 - 39443068
Alignment:
| Q |
1 |
ctctaaatctcttcctctcctttgtttgtctctttttacttccgaaatttagttgacaacaactttgtaacatgatgaggacaccatgcatgaatcaacc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39443199 |
ctctaaatctcctcctctcctttgtttgtctctttttacttccgaaatttagttgacaacaactttgtaacatgatgaggacaccatgcatgaatcaacc |
39443100 |
T |
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| Q |
101 |
accatcaatattcaggttttctttttaattga |
132 |
Q |
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| T |
39443099 |
gctgtcaatattcagtttttctttttaattga |
39443068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 19703681 - 19703713
Alignment:
| Q |
69 |
aacatgatgaggacaccatgcatgaatcaacca |
101 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
19703681 |
aacatgatgaggacaccatacatgaatcaacca |
19703713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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