View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_17 (Length: 395)
Name: NF9863_low_17
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 37941501 - 37941137
Alignment:
| Q |
18 |
attctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatg |
117 |
Q |
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| T |
37941501 |
attctcatctcaaaatgggtaatgtcttggaggaattaggaatattgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatg |
37941402 |
T |
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| Q |
118 |
ggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatcatatggattaattaattgtttaatttcataagtgtattttgtaaagcaac |
217 |
Q |
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| T |
37941401 |
ggcccgaagaactcatcatgacaccattaacaacaatgattcatgtgatcatatggattaattaattgtttaatttcataagtgtaatttgtaaagcaac |
37941302 |
T |
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| Q |
218 |
tgatgctagtataattaagttcactcattatgtttttgttcatgaaaaatggtattggtagtataattctaatgtatgaaagagtgaattttggtatttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37941301 |
tgatgctagtataattaagttcactcattatgtttttgttcatgaaaaatggtactggtagtataattctaatgtatgaaagagtgaattttggtatttc |
37941202 |
T |
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| Q |
318 |
ctcaacttaactatatgaccatcaaatcaattaaacatttcttctttgccttgtacttttggtct |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37941201 |
ctcaacttaactatatgaccatcaaatcaattaaacatttcttctttgccttgtacttttggtct |
37941137 |
T |
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