View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9863_low_19 (Length: 392)
Name: NF9863_low_19
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 36357902 - 36358204
Alignment:
| Q |
23 |
aagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357902 |
aagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtt |
36358001 |
T |
|
| Q |
123 |
tccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36358002 |
tccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatc |
36358101 |
T |
|
| Q |
223 |
cataacttagtcttatgatccatatcnnnnnnnnnnnntgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagc |
322 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36358102 |
cataacttagtcttatgatccatatcaaaaagaaaaaatgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagc |
36358201 |
T |
|
| Q |
323 |
taa |
325 |
Q |
| |
|
||| |
|
|
| T |
36358202 |
taa |
36358204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 36358219 - 36358250
Alignment:
| Q |
344 |
agagatgaaagacaaaaatttgtatgaccttg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36358219 |
agagatgaaagacaaaaatttgtatgaccttg |
36358250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 5573458 - 5573573
Alignment:
| Q |
34 |
ttggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctg |
133 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||| ||| ||||| |||||||||||||||||||| || | |
|
|
| T |
5573458 |
ttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagaggtaggaaggttattgttgtttccactatcag |
5573557 |
T |
|
| Q |
134 |
ataaagaatctccaaa |
149 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5573558 |
ataaagaatctccaaa |
5573573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 5576695 - 5576758
Alignment:
| Q |
109 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
172 |
Q |
| |
|
||||| || ||||||||||| || ||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
5576695 |
aggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 5587064 - 5587127
Alignment:
| Q |
109 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
172 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||| || || ||||| || ||||||| |
|
|
| T |
5587064 |
aggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttggg |
5587127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 5593300 - 5593363
Alignment:
| Q |
109 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
172 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| || |||||||| || ||||||| |
|
|
| T |
5593300 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
5593363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 7017571 - 7017710
Alignment:
| Q |
31 |
ccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgt |
130 |
Q |
| |
|
||||| ||||| ||||| || ||||| | |||||||| || ||||| || ||||||||||||| ||| ||| | || | ||||||||||||||||| |
|
|
| T |
7017571 |
ccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgt |
7017670 |
T |
|
| Q |
131 |
ctgataaagaatctccaaaaatgaaaagacatggtacttg |
170 |
Q |
| |
|
| |||||||| || ||||||| |||||||| || ||||| |
|
|
| T |
7017671 |
cagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University