View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_21 (Length: 365)
Name: NF9863_low_21
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 43240348 - 43240017
Alignment:
| Q |
15 |
gacaagaaatgctatgtatgctagggtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtat |
114 |
Q |
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| T |
43240348 |
gacaagaaatgctatgtatgctagagtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtat |
43240249 |
T |
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| Q |
115 |
gcagctcctgttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccac-tttatataaaa |
213 |
Q |
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| T |
43240248 |
gctgctcctgttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccacttttatataaaa |
43240149 |
T |
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| Q |
214 |
aattactcatttaattaattgatccaatcatttatatatatttgtaaactttatttaccttaagtgccttgcctccaaggaggatgaaacccatgttccc |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43240148 |
aattactcatttaattaattgatccaatcatt----tatatttgtaaactttatttaccttaagtgccttgcctccaaggaggatgaaacccatgttccc |
43240053 |
T |
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| Q |
314 |
aagaagaagggtcaaaaactgagaagtccatgttag |
349 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43240052 |
aagaagaagggtcaaaaactgagaagtccatgttag |
43240017 |
T |
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