View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_23 (Length: 352)
Name: NF9863_low_23
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 35005000 - 35004674
Alignment:
| Q |
14 |
agacaaaaggtagaaaaacaaaagtccttccaattaaccccacccacttgaacctatggttaannnnnnngtttctcattacctcttcttcattcatcaa |
113 |
Q |
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| T |
35005000 |
agacaaaaggtagaaaaacaaaagtccttccaattaaccccacccacttgaacctatggttaatttttttgtttctcattacctcttcttcattcatcaa |
35004901 |
T |
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| Q |
114 |
ccttaattcaaatctctctaataaccttatttaaaaatttaat---tatttctcttttgtcaagcctggctaattcttatttcattgaatgttcatggca |
210 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004900 |
ccttaattcaaatctctctaataacctcatttaaaaatttaataattatttctcttttgtcaagcctggctaattcttatttcattgaatgttcatggca |
35004801 |
T |
|
| Q |
211 |
ccaaggaggggcctattggatggaggagaggaccgttatggattaatgtcttttggcaccaaagacattttcactatgcgacgtaaaataagatattggc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35004800 |
ccaaggaggggcctattggatggaggagaggaccgttatggattaatgtcttttggcaccaaagacattttcactatgcgacgtaaaataagatattggc |
35004701 |
T |
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| Q |
311 |
aaaaacaattcaagcaacgacatttat |
337 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35004700 |
aaaaacaattcaagcaacgacatttat |
35004674 |
T |
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