View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_24 (Length: 349)
Name: NF9863_low_24
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 339
Target Start/End: Complemental strand, 37307054 - 37306821
Alignment:
| Q |
107 |
tgcgatggtgataatacgcagatgnnnnnnnn-ctttaattaacaaataattaaggaaaaagtctgtgttgaaattgatatacgctttcgttgacacgta |
205 |
Q |
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| T |
37307054 |
tgcgatggtgataatacgcagatgtttttttttctttaattaacaaataactaaggaaaaagtctgtgttgaaattgatatacgctttcgttgacacgta |
37306955 |
T |
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| Q |
206 |
cttcggcatgaaaaactaacgaagaacgcaacgcctatcaaaagcgatgattattaactaagtaatacataattcaaagaagaaaacagtggaatgtgag |
305 |
Q |
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| T |
37306954 |
cttcggcatgaaaaactaacgaagaacgcaacgcctatcaaaagcgatgattattaactaagtaatacataatacaaagaagaaaacagtggaatgtgag |
37306855 |
T |
|
| Q |
306 |
agtgaaacgtactatgaaactgaaacagcctttg |
339 |
Q |
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| T |
37306854 |
agtgaaacgtactatgaaactgaaacagcctttg |
37306821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 7842039 - 7842124
Alignment:
| Q |
146 |
taacaaataattaaggaaaaagtctgtgttgaaattgatatacgctttcgttgacacgtacttcggcatgaaaaactaacgaagaa |
231 |
Q |
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| T |
7842039 |
taacaaataattaagaaacaagtctgtgttgaaattgaattacgctttcgttgacacgtacttcggcatgagaaactaacaaagaa |
7842124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 7842195 - 7842235
Alignment:
| Q |
297 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
337 |
Q |
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| T |
7842195 |
gaatgtgagagtgaaacatactatgaatctgaaacatcctt |
7842235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 16663774 - 16663814
Alignment:
| Q |
297 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
337 |
Q |
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| T |
16663774 |
gaatgtgagagtgaaacgtactatgaatctgaaacaacctt |
16663814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 17638134 - 17638174
Alignment:
| Q |
297 |
gaatgtgagagtgaaacgtactatgaaactgaaacagcctt |
337 |
Q |
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| T |
17638134 |
gaatgtgagagtgaaacgtactatgaatctgaaacaacctt |
17638174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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