View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9863_low_25 (Length: 344)

Name: NF9863_low_25
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9863_low_25
NF9863_low_25
[»] chr7 (1 HSPs)
chr7 (1-292)||(3417516-3417807)
[»] chr5 (2 HSPs)
chr5 (1-285)||(12540584-12540868)
chr5 (1-283)||(28385233-28385515)
[»] chr2 (3 HSPs)
chr2 (35-285)||(13448296-13448546)
chr2 (1-292)||(13440099-13440390)
chr2 (1-292)||(13454733-13455024)
[»] chr4 (4 HSPs)
chr4 (35-283)||(48965262-48965510)
chr4 (39-292)||(48958081-48958337)
chr4 (5-188)||(48912438-48912621)
chr4 (222-292)||(48961413-48961486)
[»] chr6 (2 HSPs)
chr6 (39-292)||(12483450-12483709)
chr6 (117-256)||(12590197-12590336)
[»] scaffold0536 (2 HSPs)
scaffold0536 (5-292)||(6497-6787)
scaffold0536 (44-256)||(10518-10730)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 3417807 - 3417516
Alignment:
Q  1 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3417807 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattgaacaa 3417708  T
Q  101 ttgatctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgca 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  3417707 ttgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgca 3417608  T
Q  201 ggatggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417607 gggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 12540584 - 12540868
Alignment:
Q  1 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaa 100  Q
    |||||||||||||||||||| |||||| || || ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||    
T  12540584 ccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataa 12540683  T
Q  101 ttgatctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgca 200  Q
     ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||| ||||||    
T  12540684 gtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgca 12540783  T
Q  201 ggatggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 285  Q
    || ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540784 gggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 28385233 - 28385515
Alignment:
Q  1 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaa 100  Q
    |||||||||||||||||||| |||||| || || |||||| ||| ||||||||||||||||||||| ||| |||  |||||| | ||||||||||   ||    
T  28385233 ccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaa 28385332  T
Q  101 ttgatctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgca 200  Q
     |||||| ||||||  |||||||||||||||||||||||||| | |||||||||||| | ||||||||| || |||||||||| ||||||||| ||||||    
T  28385333 gtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgca 28385432  T
Q  201 ggatggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 283  Q
    || | |||||||||| |||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385433 gggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 35 - 285
Target Start/End: Original strand, 13448296 - 13448546
Alignment:
Q  35 ccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattgga 134  Q
    ||||||||||||||| ||||| |||||||||||||| | ||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  13448296 ccattctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattgga 13448395  T
Q  135 actcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaac 234  Q
    ||||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||| |||||||||||||||||    
T  13448396 actcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaac 13448495  T
Q  235 ccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 285  Q
    |||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448496 ccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 13440099 - 13440390
Alignment:
Q  1 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaa 100  Q
    ||||||||| ||||||| ||| |||||    || |||||| |||||||| |||||||||||||||||||||| ||||||||  |||||||| ||| | ||    
T  13440099 ccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaa 13440198  T
Q  101 ttgatctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgca 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||| |||||||||||||| ||||||    
T  13440199 ttgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgca 13440298  T
Q  201 ggatggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    || ||||||||||||| ||| ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440299 gggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 13454733 - 13455024
Alignment:
Q  1 ccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaa 100  Q
    ||||||||| ||||||| ||| ||||  || || ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||| | ||    
T  13454733 ccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaa 13454832  T
Q  101 ttgatctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgca 200  Q
    ||||||||||||  | ||||||||||||||||||||||||   |||||||||||||||| |||||||||||| ||||| |||||||||||||| || |||    
T  13454833 ttgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgca 13454932  T
Q  201 ggatggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    || || |||||||||| ||| ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454933 gggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 48965262 - 48965510
Alignment:
Q  35 ccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattgga 134  Q
    ||||||||||||||| |||||||||||||| ||||| |||| |||||| ||||| || ||| | ||||| ||||||||    ||||| || ||||| |||    
T  48965262 ccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgga 48965361  T
Q  135 actcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaac 234  Q
    || ||||||| ||||||||| ||    |||||||  |||||||| ||||||||  | || || || || |||||||  ||| ||||||| || |||||||    
T  48965362 acccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaac 48965461  T
Q  235 ccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 283  Q
    ||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965462 ccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 292
Target Start/End: Original strand, 48958081 - 48958337
Alignment:
Q  39 tctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactc 138  Q
    ||||||||||| || ||||| ||||||||||| || |  ||||| |  ||||||||| | ||||| ||||||||  |||||||||| ||||||||||| |    
T  48958081 tctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaaccc 48958180  T
Q  139 ccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaacccct 238  Q
    |||| ||||||||||| ||    ||||||| ||| ||||||||||||||| | || || |||   |||||||  |||  ||| ||||||||||| |||||    
T  48958181 ccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccct 48958280  T
Q  239 aacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    || |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958281 aatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 48912621 - 48912438
Alignment:
Q  5 cttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattga 104  Q
    ||||| ||| ||||||||||||  ||  | |||||| |||||||| || ||||| ||||| ||  | || |||||||| |  ||||||||| | || ||     
T  48912621 cttctctctttccccaataccagttgtgctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgt 48912522  T
Q  105 tctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaat 188  Q
    ||||||||   ||||||||| ||||||||||| || |||||||| ||||| ||    || |||| |||||||||||||||||||    
T  48912521 tctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaat 48912438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  222 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 292
Target Start/End: Complemental strand, 12483709 - 12483450
Alignment:
Q  39 tctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactc 138  Q
    ||||||||||| |||||||| ||||| ||||| || |  ||||| |||||||||||| | || || || || ||| |||||||||| ||||||||||  |    
T  12483709 tctgttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatcc 12483610  T
Q  139 ccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaacccct 238  Q
    | |||||||| || || || |  || ||||  ||||| || ||||||||| | || || ||||| |||||||| ||| | |||||||| ||||| |||||    
T  12483609 ctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccct 12483510  T
Q  239 aacgatcaaaccc------ttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
     | ||| ||||||      ||| ||| |||||||||||||||||||||||||| ||||||    
T  12483509 gatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaacca 12483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 12590336 - 12590197
Alignment:
Q  117 ggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatct 216  Q
    ||||| || ||||| |||| ||| |||||||| ||||| ||||  || ||||  |||||||||||||||||  | || || |||   |||||||  |||     
T  12590336 ggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatca 12590237  T
Q  217 gaacctgtggggcccaacccctaacgatcaaacccttctt 256  Q
      || ||||||||||||||||||| |||||||||||||||    
T  12590236 ttacttgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 6787 - 6497
Alignment:
Q  5 cttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattga 104  Q
    ||||| ||||||||||||||||  || || ||| || | ||| || ||  |||| ||||||| ||| || |||||||| |  || |||||| | |||||     
T  6787 cttctctctctccccaataccagttgaactccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgt 6688  T
Q  105 tctccatgacccggccacgttatcattggaactcccgcactaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggat 204  Q
    ||||||||  |||||||||| ||||| ||||| || |||||||||||||| ||    || |||| ||||||||| ||||||||  | || |  ||    |    
T  6687 tctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgt 6588  T
Q  205 ggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 292  Q
    ||||||| |||  ||| ||||| |||||||||||||  ||||||||   ||||||||| || |||||||| || |||||||| | ||||||    
T  6587 ggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 256
Target Start/End: Complemental strand, 10730 - 10518
Alignment:
Q  44 tgcacctacttccactccaattcctcgaacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcccgca 143  Q
    |||||| |||||| | ||||| || || ||||| ||||| |  ||||||||| | ||||| ||||||||    |||||||| ||||||||||| || |||    
T  10730 tgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgca 10631  T
Q  144 ctaacagcctctacgaatgagttccccccacaatgtgtcataaatccccctaccgcaggatggctcaatatctgaacctgtggggcccaacccctaacga 243  Q
    ||||| ||||| |||   || |||| ||||||||||||||||||  | || ||  |||  ||||| |  |||  |||||| |||||||||||| |||  |    
T  10630 ctaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataa 10531  T
Q  244 tcaaacccttctt 256  Q
    |||||||||||||    
T  10530 tcaaacccttctt 10518  T

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