View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_29 (Length: 329)
Name: NF9863_low_29
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_29 |
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| [»] scaffold0317 (1 HSPs) |
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| [»] scaffold0306 (1 HSPs) |
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| [»] scaffold0515 (1 HSPs) |
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Alignment Details
Target: scaffold0317 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 40 - 329
Target Start/End: Original strand, 19145 - 19446
Alignment:
| Q |
40 |
cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagacctcaccgtcgtcattaccatc-------------tgaa |
126 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
19145 |
cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagacctcaccgccgtcattaccatcctcacctcaaatctgaa |
19244 |
T |
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| Q |
127 |
caccattaacgtcatctatcaccatctcatctcaccgtcaccgcggtgctcaccctctttcgcattcatatttgttctgtcagcctcactctcctctcca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19245 |
caccattaacgtcatctatcaccatctcatctcaccgtcaccgccgtgctcaccctctttcgcattcatatttgttctgtcagcctcactctcctctcca |
19344 |
T |
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| Q |
227 |
aaacacaacatcaaagtggccgaaagtggaggcaatgaggatgaagaaaagcagaggttctgatttagagaagagcaaaagtgagagagaagagtagagg |
326 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19345 |
aaacacaacatcaaagtggccg-aagtggaggcaatgaggatgaagaaaagcagaggttctgatttagagaagagcaaaaatgagagagaagagtagagg |
19443 |
T |
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| Q |
327 |
ttc |
329 |
Q |
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||| |
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| T |
19444 |
ttc |
19446 |
T |
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Target: scaffold0306 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 64 - 1
Alignment:
| Q |
40 |
cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagacct |
103 |
Q |
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| T |
64 |
cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagacct |
1 |
T |
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Target: scaffold0515 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 62 - 1
Alignment:
| Q |
40 |
cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagac |
101 |
Q |
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| T |
62 |
cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagac |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 39481211 - 39481085
Alignment:
| Q |
125 |
aacaccattaacgtcatctatcaccatctcatctcaccgtcacc------------gcggtgctcaccctctttcgcattcatatttgttctgtcagcct |
212 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||||| || |||| |
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| T |
39481211 |
aacactattaacgtcatctatcaccatctcatctcaccgtcaccaccaccgccaccgccgtccgcaccctctctcgcattcatatttgttctctctgcct |
39481112 |
T |
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| Q |
213 |
cactctcctctccaaaacacaacatca |
239 |
Q |
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| T |
39481111 |
cactctcttctccaaaacccaacatca |
39481085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 21156854 - 21156902
Alignment:
| Q |
120 |
atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc |
168 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
21156854 |
atctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc |
21156902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 4117549 - 4117597
Alignment:
| Q |
120 |
atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc |
168 |
Q |
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| T |
4117549 |
atctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc |
4117597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 43045936 - 43045974
Alignment:
| Q |
242 |
gtggccgaaagtggaggcaatgaggatgaagaaaagcag |
280 |
Q |
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| T |
43045936 |
gtggccgaaactggaggcgatgaggatgaagaaaagcag |
43045974 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 47933984 - 47933936
Alignment:
| Q |
120 |
atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc |
168 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
47933984 |
atctgaacaccattaacgtcgtctattaccatctcatctcaccgtcacc |
47933936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 30849786 - 30849830
Alignment:
| Q |
124 |
gaacaccattaacgtcatctatcaccatctcatctcaccgtcacc |
168 |
Q |
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| T |
30849786 |
gaacaccattaacatcatctattaccatctcatctcaccgtcacc |
30849830 |
T |
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