View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_30 (Length: 327)
Name: NF9863_low_30
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 30404458 - 30404755
Alignment:
| Q |
1 |
aatatgttctgatttctctattaaaaatcagaatctgcattctaccttaacnnnnnnnnnnnnnnnnnnnnccactgtcatccttctcaaaccttttgaa |
100 |
Q |
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| T |
30404458 |
aatatgttctgatttctctattaaaaatcagaatctgcattctaccttaacaatataataataataataatccactgtcatccttctcaaaccttttgaa |
30404557 |
T |
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| Q |
101 |
catgccttgttgtcgtaccaaatgaaaactatatgctcgtacatagtatcaaattttgttatttagttttatat-------------tataattataata |
187 |
Q |
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| T |
30404558 |
cgtgccttgttgtcgtaccaaatgaaaactatatgctcgtacatagtatcacattttgttatttagttttatatatagtttataaattataattataata |
30404657 |
T |
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| Q |
188 |
atttgacttggttcttttcatgtttccattgaagtattaattcattttttcaattgtatcatttaatatcaagcatgtgaatcactctaaagtcatta |
285 |
Q |
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| T |
30404658 |
atttgacttggttcttttcatgtttccattgaaatattaattcattttttcaattgtatcatttaatatcaagcatgtgaatcactctaaagtcatta |
30404755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 30404789 - 30404831
Alignment:
| Q |
285 |
accaatactaaatttatgataattttgtaaaattagtagtttt |
327 |
Q |
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| T |
30404789 |
accaatactaaatttatgataattttgtaaaattagtagtttt |
30404831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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