View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_32 (Length: 325)
Name: NF9863_low_32
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42524584 - 42524816
Alignment:
| Q |
1 |
atcgtacatgcataaaaaggctgaacgatatatcatcaaataactagtttgatatgatgtgaatgtgatgaattttatgaaatgcaacatgcattgggat |
100 |
Q |
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| T |
42524584 |
atcgtacatacataaaaaggctgaacgatatatcatcaaataactagtttgatatgatgtgaatgtgatgaattttatgaaatgcaacatgcattgggat |
42524683 |
T |
|
| Q |
101 |
tttcatcactaaagagttgaggtggtggtggcattcgttcaacaacatagagtggctgattataatagttatagtacaccatcctcttcatcatatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42524684 |
tttcatcactaaagagttgaggtggtggtggcattcgttcaacaacatagagtggctgattataatagttatagtacatcatcctcttcatcatatcttc |
42524783 |
T |
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| Q |
201 |
ctcatcatgaactccattaatctcttccccatc |
233 |
Q |
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| T |
42524784 |
ctcatcatgaactccattaatctcttccccatc |
42524816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 42524875 - 42524908
Alignment:
| Q |
292 |
ggtttaacctcttcttctgctggtttctctcctt |
325 |
Q |
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| T |
42524875 |
ggtttagcctcttcttctgctggtttctctcctt |
42524908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 40170026 - 40169895
Alignment:
| Q |
29 |
tatatcatcaaataactagtttgatatgatgtgaatgtgatgaattttatgaaatgcaacatgcattgggattttcatcactaaagagttgaggtggtgg |
128 |
Q |
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| T |
40170026 |
tatatcatcaaatacctagtttgatatcatgtgaatgtgatgaattttatgaaatacaatgtgcattggggttttcatcactaaagagttgaggtggttg |
40169927 |
T |
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| Q |
129 |
tggcattcgttcaacaacatagagtggctgat |
160 |
Q |
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||| |||| |||| | ||||||| | |||||| |
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| T |
40169926 |
tgggattccttcatccacatagactagctgat |
40169895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 40170129 - 40170026
Alignment:
| Q |
15 |
aaaaggctgaacgatatatcatcaaataactagtttgatatgatgtgaatgtgatgaattttatgaaatgcaacatgcattgggattttcatcactaaag |
114 |
Q |
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||||||||||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||||||| || | ||||||| ||||||||||||||| |
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| T |
40170129 |
aaaaggctgaatgttatatcatcaaatacctggtttgatatcatgtgaatgtgatgaattttatgaaatacattgttcattggggttttcatcactaaag |
40170030 |
T |
|
| Q |
115 |
agtt |
118 |
Q |
| |
|
|||| |
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|
| T |
40170029 |
agtt |
40170026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 29283053 - 29282999
Alignment:
| Q |
74 |
tttatgaaatgcaacatgcattgggattttcatcactaaagagttgaggtggtgg |
128 |
Q |
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||||||||||| |||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
29283053 |
tttatgaaatgatgcatgcattaggattttcatcactgaatagttgaggtggtgg |
29282999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 6469834 - 6469888
Alignment:
| Q |
74 |
tttatgaaatgcaacatgcattgggattttcatcactaaagagttgaggtggtgg |
128 |
Q |
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|||||||||||| |||||||| |||||||||||||| || |||||||| ||||| |
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|
| T |
6469834 |
tttatgaaatgctgcatgcattaggattttcatcactgaatagttgaggaggtgg |
6469888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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