View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_33 (Length: 320)
Name: NF9863_low_33
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 44867279 - 44866985
Alignment:
| Q |
7 |
tatggtgttgatcgttaaatccaataaccaaagaataaaaaatgacggacaagaaaatagaagaaaattgttttcatacttaaatacattgatatgaaca |
106 |
Q |
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| T |
44867279 |
tatggtgttgatcgttaaatccaataaccaaagaataaaaaatgacggacaagaaaatagaagaaaattgttttcatacttaaatacattgatatgaaca |
44867180 |
T |
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| Q |
107 |
tgcaagagaaaggagcaagttaccatgtaatagcaaacaattttaaacgtctttttcctaagtttatgttcgttcatgccgaggacttttcattgattgt |
206 |
Q |
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| T |
44867179 |
tgcaagagaaaggagcaagttaccatgtaatagcaaacaattttaaacgtctttttcctaagtttatgttcgttcatgccgaggacttttcattgattgt |
44867080 |
T |
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| Q |
207 |
caaatacttatacaccttaaacttatatttcattctagagtaataataacttgttggtatatgttgtattttatataattgtcgaacccccggcc |
301 |
Q |
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| T |
44867079 |
caaatacttatacaccttaaacttatatttcattctagagtaataataacttgttggtatatgttgtattgtatataattgtcgaacccccggcc |
44866985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 44862924 - 44862836
Alignment:
| Q |
138 |
agcaaacaatttt-aaacgtctttttcctaagtttatgttcgttcatgccgaggacttttcattgattgtcaaatacttatacacctta |
225 |
Q |
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| T |
44862924 |
agcaaacaatttttaaacgtcgttttcctaaatttgtgttcggtcctgccgtggacttttccttgattgtcaaatactgatactcctta |
44862836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 42363658 - 42363570
Alignment:
| Q |
139 |
gcaaacaatttt-aaacgtctttttcctaagtttatgttcgttcatgccgaggac-----ttttcattgattgtcaaatacttatacac |
221 |
Q |
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| T |
42363658 |
gcaaacaatttttaaacatcgttttgctaagtttatgttcgatcgtgccgaggactttaattttcattgattgtcaaatagtgatacac |
42363570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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