View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_35 (Length: 289)
Name: NF9863_low_35
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 52002754 - 52002478
Alignment:
| Q |
1 |
cgacccttttgaaattaatctgtgttgaaggatccaattatttttatttctatgtttattttctnnnnnnntttgttactttgcagtttgaggtggagag |
100 |
Q |
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| T |
52002754 |
cgacccttttgaaattaatctgtgttgaaggatccaattatttttatttctatgtttattttctaaatttttttgttactttgcagtttgaggtggagag |
52002655 |
T |
|
| Q |
101 |
gagtgcggacacaagggttgaaatttgttgtgcagggaagccagggttgttgctatccacagtaaacacattggaagcattaggccttgagattcaacaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002654 |
gagcgcggacacaagggttgaaatttgttgtgcagggaagccagggttgttgctatccacagtaaacacattggaagcattaggccttgagattcaacaa |
52002555 |
T |
|
| Q |
201 |
tgtgttattagctgtttcaatgatttcacaatgcaggctttttgctcagaggtacattagttacttactacttcctt |
277 |
Q |
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| T |
52002554 |
tgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggtacattagttacttactaattcctt |
52002478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 25901697 - 25901468
Alignment:
| Q |
39 |
tatttttatttctatgtttattttctnnnnnnntttgttactttgcagtttgaggtggagaggagtgcggacacaagggttgaaatttgttgtgcaggga |
138 |
Q |
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||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
25901697 |
tatttttatttctgtgtatattttctatttttttttgttactttgcagtttgaggtggagaggagtgcagacacaagggttgaaatttgttgtgcacgga |
25901598 |
T |
|
| Q |
139 |
agccagggttgttgctatccacagtaaacacattggaag---cattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgca |
235 |
Q |
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| T |
25901597 |
agccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatgttattagctgtttcaatgatttcacaatgca |
25901498 |
T |
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| Q |
236 |
ggctttttgctcagaggtacattagttact |
265 |
Q |
| |
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||||| |||||||||||||||||||||||| |
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| T |
25901497 |
ggcttcttgctcagaggtacattagttact |
25901468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 25901776 - 25901740
Alignment:
| Q |
3 |
acccttttgaaattaatctgtgttgaaggatccaatt |
39 |
Q |
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| T |
25901776 |
acccttttgaaattaatctgtgttgaaggatccaatt |
25901740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 29010065 - 29010180
Alignment:
| Q |
138 |
aagccagggttgttgctatccacagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcagg |
237 |
Q |
| |
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|||||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||| || |||| | |
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| T |
29010065 |
aagccaggattgttactgtcaacagtgaacacattagaagcattaggccttgagattcaccagtgtgttataagcagtttcaatgatttttcattgcaag |
29010164 |
T |
|
| Q |
238 |
ctttttgctcagaggt |
253 |
Q |
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| | |||||||||||| |
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| T |
29010165 |
catcttgctcagaggt |
29010180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 13148852 - 13148737
Alignment:
| Q |
138 |
aagccagggttgttgctatccacagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcagg |
237 |
Q |
| |
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|||||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||| || |||| | |
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| T |
13148852 |
aagccaggattgttactgtcaacagtgaacacattagaagcattaggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaag |
13148753 |
T |
|
| Q |
238 |
ctttttgctcagaggt |
253 |
Q |
| |
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| | |||||||||||| |
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| T |
13148752 |
catcttgctcagaggt |
13148737 |
T |
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