View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9863_low_36 (Length: 276)
Name: NF9863_low_36
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 100 - 276
Target Start/End: Original strand, 36492596 - 36492772
Alignment:
| Q |
100 |
cacacgcaacctctcaatcttgggttttaaatgtaattaagtagcaatggaaaaaatttaagttttgtaaaagttctgatttttgaaattgaatgtttga |
199 |
Q |
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| T |
36492596 |
cacacacaacctctcaatcgtgggttttaaatgtaattaagtagcaatggaaaaaatttaagttttgtaaaagttctgattttttaaattgaatgtttga |
36492695 |
T |
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| Q |
200 |
ttataggtctttcgtttcgtatggatggaagaaagggcattgaatttgaagatcagagaaaaggttattcatcattt |
276 |
Q |
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| T |
36492696 |
ttataggtctttcgtttcgtatggatggaagaaagggcattgaatttgaagatcagagaaaaggttattcatcattt |
36492772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 36484901 - 36484984
Alignment:
| Q |
171 |
agttctgatttttgaaattgaatgtttgattataggtctttcgtttcgtatggatggaagaaagggcattgaatttgaagatca |
254 |
Q |
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| T |
36484901 |
agttctgatttttgaaattgaatgtttgattacaggtctttcatttcgtatgggtggaagtaaaggcactgcattggaagatca |
36484984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 36492538 - 36492571
Alignment:
| Q |
34 |
gatgaacctccaatttgtagatcttatcttggta |
67 |
Q |
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| T |
36492538 |
gatgaacctccaatttgtagatcttatcttggta |
36492571 |
T |
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