View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9863_low_39 (Length: 267)
Name: NF9863_low_39
Description: NF9863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9863_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 18006154 - 18005909
Alignment:
| Q |
1 |
ttccaaaatctgcagctggttttccagttgttgggtagcaacaactactcttctgtgagtcacaatatgatcctggccactgcaaatggaaaaaccccaa |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18006154 |
ttccaaaatctgcagcaggctttccagttgttgggtagcaacaactactcttctgtgagtcacaatatgatcctggccactgcaaatggaaaaaccccaa |
18006055 |
T |
|
| Q |
101 |
acaataatttaacacacattctttataacaaactaaataaattnnnnnnntattccactcaacgtgtatacatgttcaaaagaaacaaatttttcatcgt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| | | |
|
|
| T |
18006054 |
acaataatttaacacaaattctttataac----taaataaattaaaaaaatattccactcaacgtgtatacatgttcgaaagaaacatatttttcttgtt |
18005959 |
T |
|
| Q |
201 |
ctaaaagtacacttttgaacaaaatatgtcgttccaaagtatatttcagaa |
251 |
Q |
| |
|
| |||||||||||| ||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
18005958 |
c-aaaagtacacttctgaacaaaatacgtcggtccaaagtatatttcagaa |
18005909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 17998722 - 17998632
Alignment:
| Q |
1 |
ttccaaaatctgcagctggttttccagttgttgggtagcaacaactactcttctgtgagtcacaatatgatcctggccactgcaaatggaaaaa |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17998722 |
ttccaaaatctgcagcaggttttccagttgttgggtagcaaca---actcttttttgagtcacaatatgatcctggccactgcaaatgcaaaaa |
17998632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University